OR10G4 Olfactory Receptor
Gene Symbol | OR10G41 (View this gene in GeneCards) |
Family | 10 |
Subfamily | G |
Pseudogene | No |
CORP pseudogene probability score | 0.05 (functional) |
Aliases | OR11-278, HsOR11.18.11, ORL3288 |
External Ids | HGNC: 14809 GeneBank: AB065757, BK004502, NM_001004462 ORDB: ORL3288 |
Build #39 labels | OR10G4 |
Chromosomal location | 11:124,015,575-124,016,507 (+) |
Cluster | 11@124 |
Synteny | CLIC#29 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR10G7 | 91.42% | 303 |
OR10G8 | 87.14% | 311 |
OR10G9 | 94.82% | 309 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR10G9C | 86% | 311 |
Dog | OR10G9 | 85% | 311 |
Dog | OR10G7BP | 84% | 304 |
Mouse | Or10g9 | 86% | 311 |
Mouse | Or10g9b | 85% | 310 |
Mouse | Or10g7 | 85% | 311 |
Rat | Or10g9 | 86% | 309 |
Rat | Or10g9b | 85% | 310 |
Cow | OR10G9E | 82% | 311 |
Cow | OR10G4B | 82% | 311 |
Cow | OR10G9D | 80% | 311 |
Orang | OR10G9 | 91% | 311 |
Orang | OR10G9I | 88% | 311 |
Horse | OR10G9 | 86% | 307 |
Horse | OR10G9J | 85% | 311 |
Horse | OR10G7 | 85% | 304 |
Horse | OR10G9K | 86% | 291 |
Chimp | OR10G9 | 93% | 311 |
Expression evidences
Source | Accession |
---|---|
GNF Atlas2 | gnf1h05557_at |
GNF Atlas2 | gnf1h05558_s_at |
Sequence information
Nucleotide sequence |
ATGTCCAACGCCAGCCTCGTGACAGCATTCATCCTCACAGGCCTTCCCCATGCCCCAGGG CTGGACGCCCTCCTCTTTGGAATCTTCCTGGTGGTTTACGTGCTCACTGTGCTGGGGAAC CTCCTCATCCTGCTGGTGATCAGGGTGGATTCTCACCTCCACACCCCCATGTACTACTTC CTCACCAACCTGTCCTTCATTGACATGTGGTTCTCCACTGTCACGGTGCCCAAAATGCTG ATGACCTTGGTGTCCCCAAGCGGCAGGGCTATCTCCTTCCACAGCTGCGTGGCTCAGCTC TATTTTTTCCACTTCCTGGGGAGCACCGAGTGTTTCCTCTACACAGTCATGTCCTATGAT CGCTACTTGGCCATCAGTTACCCGCTCAGGTACACCAGCATGATGAGTGGGAGCAGGTGT GCCCTCCTGGCCACCGGCACTTGGCTCAGTGGCTCTCTGCACTCTGCTGTCCAGACCATA TTGACTTTCCATTTGCCCTACTGTGGACCCAACCAGATCCAGCACTACTTCTGTGACGCA CCGCCCATCCTGAAACTGGCCTGTGCAGACACCTCAGCCAACGTGATGGTCATCTTTGTG GACATTGGGATAGTGGCCTCAGGCTGCTTTGTCCTGATAGTGCTGTCCTATGTGTCCATC GTCTGTTCCATCCTGCGGATCCGCACCTCAGATGGGAGGCGCAGAGCCTTTCAGACCTGT GCCTCCCACTGTATTGTGGTCCTTTGCTTCTTTGTTCCCTGTGTTGTCATTTATCTGAGG CCAGGCTCCATGGATGCCATGGATGGAGTTGTGGCCATTTTCTACACTGTGCTGACGCCC CTTCTCAACCCTGTTGTGTACACCCTGAGAAACAAGGAGGTGAAGAAAGCTGTGTTGAAA CTTAGAGACAAAGTAGCACATCCTCAGAGGAAA |
Conceptual translation |
MSNASLVTAFILTGLPHAPGLDALLFGIFLVVYVLTVLGNLLILLVIRVDSHLHTPMYYF LTNLSFIDMWFSTVTVPKMLMTLVSPSGRAISFHSCVAQLYFFHFLGSTECFLYTVMSYD RYLAISYPLRYTSMMSGSRCALLATGTWLSGSLHSAVQTILTFHLPYCGPNQIQHYFCDA PPILKLACADTSANVMVIFVDIGIVASGCFVLIVLSYVSIVCSILRIRTSDGRRRAFQTC ASHCIVVLCFFVPCVVIYLRPGSMDAMDGVVAIFYTVLTPLLNPVVYTLRNKEVKKAVLK LRDKVAHPQRK Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | NS | C/T | A/V | 1000GP (YRI, YRI, YRI) |
11 | 100 | -100 | SYN | A/G | A/A | 1000GP (YRI, YRI, YRI) |
11 | 123,886,290 | 123,886,290 | NS | C/G | N/K | rs547870 (DbSNP) |
11 | 123,886,308 | 123,886,308 | SYN | A/G | A/A | rs11219407 (DbSNP) |
11 | 123,886,320 | 123,886,320 | SYN | A/G | T/T | rs12224056 (DbSNP) |
11 | 123,886,352 | 123,886,352 | NS | T/C | L/P | rs547068 (DbSNP) |
11 | 123,886,395 | 123,886,394 | Ins(1) | -/G | rs35933133 (DbSNP) | |
11 | 123,886,466 | 123,886,466 | NS | C/T | T/I | rs12422129 (DbSNP) |
11 | 123,886,583 | 123,886,583 | NS | A/G | Y/C | rs4474449 (DbSNP) |
11 | 123,886,681 | 123,886,681 | NS | G/A | V/M | rs1893766 (DbSNP) |
11 | 123,886,698 | 123,886,698 | SYN | A/G | R/R | rs3017762 (DbSNP) |
11 | 123,886,717 | 123,886,717 | NS | T/G | C/G | rs503223 (DbSNP) |
11 | 123,886,796 | 123,886,796 | NS | A/G | Q/R | rs72472246 (DbSNP) |
11 | 123,886,809 | 123,886,809 | SYN | C/T | Y/Y | rs3017763 (DbSNP) |
11 | 123,886,812 | 123,886,812 | NS | C/G | F/L | rs3017764 (DbSNP) |
11 | 123,886,822 | 123,886,822 | NS | T/C | S/P | rs1893764 (DbSNP) |
11 | 123,886,865 | 123,886,865 | NS | A/T | E/V | rs4084209 (DbSNP) |
11 | 123,886,958 | 123,886,958 | NS | A/G | Q/R | rs11219408 (DbSNP) |
11 | 123,886,984 | 123,886,984 | NS | A/G | R/G | rs4936880 (DbSNP) |
11 | 123,887,164 | 123,887,164 | NS | A/C | K/Q | rs4936881 (DbSNP) |
11 | 123,887,175 | 123,887,175 | SYN | A/G | V/V | rs61908597 (DbSNP) |
11 | 123,887,184 | 123,887,184 | SYN | G/T | L/L | rs4936882 (DbSNP) |
11 | 124,015,600 | 124,015,600 | NS | C/T | A/V | 1000GP (CEU, CHBJPT) |
11 | 124,015,601 | 124,015,601 | SYN | A/G | A/A | 1000GP (CEU, CHBJPT) |
11 | 124,015,613 | 124,015,613 | SYN | A/G | T/T | 1000GP (CEU, CHBJPT) |
11 | 124,015,645 | 124,015,645 | NS | T/C | L/P | 1000GP (CEU) |
11 | 124,016,277 | 124,016,277 | NS | A/G | R/G | 1000GP (CEU, CHBJPT) |
11 | 124,016,477 | 124,016,477 | SYN | T/G | L/L | 1000GP (CEU, CHBJPT) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 123,885,722 | 123,894,275 | CopyNumber | Variation_101364 (DGV) |
11 | 123,886,182 | 123,889,214 | Deletion | #293 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
A9V | L24P | M134V | G146S | V195E | R226Q | R235G | K295Q | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | A | L | M | G | V | R | R | K | 31.34 | 0.138 |
2 | V | L | V | G | E | R | G | Q | 28.96 | 0.138 |
3 | A | P | M | G | E | R | R | K | 14.29 | 0.138 |
4 | A | L | M | G | E | R | R | K | 8.99 | 0.138 |
5 | A | L | V | S | E | R | G | Q | 6.37 | 0.138 |
6 | A | L | V | G | E | R | G | Q | 2.76 | 0.138 |
7 | V | L | M | G | E | R | G | Q | 1.46 | 0.138 |
8 | A | L | M | S | E | R | G | Q | 1.08 | 0.138 |
9 | V | L | V | G | V | R | G | Q | 0.69 | 0.138 |
10 | V | L | V | G | E | R | G | K | 0.54 | 0.138 |
11 | A | L | M | G | E | R | G | Q | 0.46 | 0.138 |
12 | V | L | M | G | E | R | R | K | 0.38 | 0.138 |
13 | V | L | V | S | E | R | G | Q | 0.31 | 0.138 |
14 | V | L | V | G | V | R | R | K | 0.31 | 0.138 |
15 | A | L | M | S | E | R | R | K | 0.31 | 0.138 |
16 | A | L | V | S | E | R | G | K | 0.23 | 0.138 |
17 | A | L | M | G | V | R | G | Q | 0.23 | 0.138 |
18 | A | L | V | S | E | R | R | Q | 0.15 | 0.138 |
19 | A | L | V | S | E | Q | G | Q | 0.15 | 0.138 |
20 | A | L | V | G | V | R | G | Q | 0.15 | 0.138 |
21 | V | L | V | G | E | R | R | Q | 0.15 | 0.138 |
22 | A | L | M | S | E | R | G | K | 0.08 | 0.138 |
23 | V | L | V | S | E | R | R | K | 0.08 | 0.138 |
24 | A | P | M | G | V | R | R | K | 0.08 | 0.138 |
25 | V | L | M | G | V | R | R | K | 0.08 | 0.138 |
26 | V | L | V | S | V | R | G | Q | 0.08 | 0.138 |
27 | A | L | V | G | V | R | R | K | 0.08 | 0.138 |
28 | A | L | M | S | E | Q | G | Q | 0.08 | 0.138 |
29 | V | L | M | S | E | R | G | Q | 0.08 | 0.138 |
30 | V | L | M | G | V | R | G | Q | 0.08 | 0.138 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR10G4.aApr07-unspliced | main_exon | CDS | chr11 | 124,015,575 | 124,016,507 | + |
3UTR | chr11 | 124,016,507 | 124,016,510 | + |