OR10G9 Olfactory Receptor

Gene Symbol	OR10G9¹ (View this gene in GeneCards)
Family	10
Subfamily	G
Pseudogene	No
CORP pseudogene probability score	0.05 (functional)
Aliases	OR11-272, HsOR11.18.12
External Ids	HGNC: 15129 GeneBank: AB065756, BK004760, NM_001001953
Build #39 labels	OR10G9, OR10G10P
Chromosomal location	11:124,023,013-124,023,945 (+)
Cluster	11@124
Synteny	CLIC#29
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol	Percent	Length
OR10G4	94.82%	309
OR10G7	90.03%	311
OR10G8	88.1%	311

Most Similar ORs in other species (Orthologs)

Specie	Symbol	Percent	Length
Dog	OR10G9C	87%	311
Dog	OR10G7BP	84%	311
Dog	OR10G7	84%	309
Mouse	Or10g9	87%	311
Mouse	Or10g9b	86%	309
Mouse	Or10g7	87%	302
Rat	Or10g9	87%	309
Rat	Or10g9b	85%	309
Cow	OR10G9E	82%	311
Cow	OR10G9D	81%	311
Cow	OR10G4B	81%	311
Orang	OR10G9I	91%	311
Orang	OR10G4	90%	311
Orang	OR10G7	89%	311
Horse	OR10G9J	86%	311
Horse	OR10G9K	86%	311
Horse	OR10G7	85%	304
Chimp	OR10G9D	90%	311
Chimp	OR10G7	90%	311

Sequence information

Nucleotide sequence

ATGTCCAAGACCAGCCTCGTGACAGCGTTCATCCTCACGGGCCTTCCCCATGCCCCAGGG
CTGGACGCCCCACTCTTTGGAATCTTCCTGGTGGTTTACGTGCTCACTGTGCTGGGGAAC
CTCCTCATCCTGCTGGTGATCAGGGTGGATTCTCACCTCCACACCCCCATGTACTACTTC
CTCACCAACCTGTCCTTCATTGACATGTGGTTCTCCACTGTCACGGTGCCCAAAATGCTG
ATGACCTTGGTGTCCCCAAGCGGCAGGGCTATCTCCTTCCACAGCTGCGTGGCTCAGCTC
TATTTTTTCCACTTCCTGGGGAGCACCGAGTGTTTCCTCTACACAGTCATGTCCTATGAT
CGCTACTTGGCCATCAGTTACCCGCTCAGGTACACCAGCATGATGAGTGGGAGCAGATGT
GCCCTCCTGGCCACCAGCACTTGGCTCAGTGGCTCTCTGCACTCTGCTGTCCAGACCATA
TTGACTTTCCATTTGCCCTACTGTGGACCCAACCAGATCCAGCACTATTTGTGTGATGCA
CCGCCCATCCTGAAACTGGCCTGTGCAGACACCTCAGCCAACGAGATGGTCATCTTTGTG
GACATTGGGCTAGTGGCCTCGGGCTGCTTTCTCCTGATAGTGCTGTCTTATGTGTCCATC
GTCTGTTCCATCCTGCGGATCCACACCTCAGAGGGGAGGCACAGAGCCTTTCAGACCTGT
GCCTCCCACTGCATCGTGGTCCTTTGCTTTTTTGTTCCCTGTGTTTTCATTTACCTGAGA
CCAGGCTCCAGGGACGTCGTGGATGGAGTTGTGGCCATTTTCTACACTGTGCTGACACCC
CTTCTCAACCCTGTTGTGTACACCCTGAGAAACAAGGAGGTGAAGAAAGCTGTGTTGAAA
CTGAGAGACAAAGTAGCACATTCTCAGGGAGAA

Conceptual translation

MSKTSLVTAFILTGLPHAPGLDAPLFGIFLVVYVLTVLGNLLILLVIRVDSHLHTPMYYF
LTNLSFIDMWFSTVTVPKMLMTLVSPSGRAISFHSCVAQLYFFHFLGSTECFLYTVMSYD
RYLAISYPLRYTSMMSGSRCALLATSTWLSGSLHSAVQTILTFHLPYCGPNQIQHYLCDA
PPILKLACADTSANEMVIFVDIGLVASGCFLLIVLSYVSIVCSILRIHTSEGRHRAFQTC
ASHCIVVLCFFVPCVFIYLRPGSRDVVDGVVAIFYTVLTPLLNPVVYTLRNKEVKKAVLK
LRDKVAHSQGE

Protein domains and features

Variations - SNPs

Chr	Start	End	Type	Variation	AA Change	SNP IDs
11	100	-100	NS	C/T	A/V	1000GP (YRI, YRI, YRI, YRI, YRI)
11	100	-100	SYN	G/A	G/G	1000GP (YRI)
11	123,893,729	123,893,729	NS	G/A	A/T	rs634361 (DbSNP)
11	123,893,791	123,893,791	SYN	A/C/G	P/P	rs3017765 (DbSNP)
11	123,894,119	123,894,119	NS	A/G	M/V	rs12366219 (DbSNP)
11	123,894,126	123,894,126	NS	C/G	T/S	rs17128190 (DbSNP)
11	123,894,136	123,894,136	SYN	A/G	R/R	rs28499345 (DbSNP)
11	123,894,234	123,894,234	NS	A/G	Q/R	rs11219413 (DbSNP)
11	123,894,256	123,894,256	SYN	T/C	D/D	rs2924497 (DbSNP)
11	123,894,339	123,894,339	NS	C/T	S/L	rs12363627 (DbSNP)
11	123,894,361	123,894,361	SYN	G/T	V/V	rs61908611 (DbSNP)
11	123,894,402	123,894,402	NS	A/G	H/R	rs12221656 (DbSNP)
11	123,894,469	123,894,469	SYN	C/T	F/F	rs12577318 (DbSNP)
11	123,894,553	123,894,553	SYN	A/G	L/L	rs61908612 (DbSNP)
11	123,894,556	123,894,556	SYN	A/G	T/T	rs12574086 (DbSNP)
11	123,894,560	123,894,560	NS	C/T	L/F	rs12790359 (DbSNP)
11	123,894,611	123,894,611	NS	C/G	L/V	rs12576297 (DbSNP)
11	124,023,038	124,023,038	NS	C/T	A/V	1000GP (CHBJPT)
11	124,023,610	124,023,610	NS	G/T	V/L	1000GP (CHBJPT)
11	124,023,622	124,023,622	NS	C/G	L/V	1000GP (CHBJPT)
11	124,023,632	124,023,632	NS	C/T	S/L	1000GP (CEU)
11	124,023,748	124,023,748	NS	G/C	V/L	1000GP (CEU)
11	124,023,846	124,023,846	SYN	G/A	L/L	1000GP (CEU)
11	124,023,849	124,023,849	SYN	A/G	T/T	1000GP (CEU, CHBJPT)

Variations - CNVs

Chr	Start	End	Type	Sources
11	123,885,722	123,894,275	CopyNumber	Variation_101364 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

	A9V	M134V	Q172R	Y176C	V200L	I202F	S207L	H228R	V267M	D268G	% Freq	CORP
1	A	M	Q	Y	V	I	S	H	V	D	37.02	0.138
2	A	V	Q	Y	V	I	S	H	V	D	24.19	0.138
3	A	M	R	Y	V	I	S	R	V	D	20.35	0.138
4	V	M	R	C	L	I	S	R	V	D	6.99	0.118
5	V	M	Q	Y	V	I	S	H	V	D	3.15	0.138
6	A	M	Q	Y	V	F	S	H	V	D	2.00	0.138
7	A	M	R	Y	V	I	S	H	V	D	1.23	0.138
8	A	M	Q	Y	V	I	S	H	M	D	0.92	0.138
9	A	M	Q	Y	V	I	S	H	V	G	0.77	0.138
10	V	M	R	C	L	I	S	H	V	D	0.69	0.118
11	A	V	Q	Y	V	I	L	H	V	D	0.61	0.138
12	A	M	Q	Y	V	I	S	R	V	D	0.38	0.138
13	A	M	R	C	L	I	S	R	V	D	0.31	0.118
14	A	V	Q	Y	V	I	S	H	V	G	0.23	0.138
15	A	V	Q	Y	V	I	S	R	V	D	0.15	0.138
16	V	M	R	Y	V	I	S	R	V	D	0.15	0.138
17	V	M	Q	Y	V	I	L	H	V	D	0.08	0.138
18	A	M	Q	Y	L	I	S	R	V	D	0.08	0.138
19	A	M	Q	Y	V	F	S	R	V	D	0.08	0.138
20	V	M	R	C	V	I	S	H	V	D	0.08	0.118
21	V	M	Q	Y	V	I	S	R	V	D	0.08	0.138
22	A	M	R	C	L	I	S	H	V	D	0.08	0.118
23	A	M	R	Y	V	I	S	R	V	G	0.08	0.138
24	A	M	Q	Y	V	I	L	H	V	D	0.08	0.138
25	V	M	R	C	V	I	S	R	V	D	0.08	0.118
26	A	V	Q	Y	V	F	S	H	V	D	0.08	0.138
27	V	M	R	Y	V	I	S	H	V	D	0.08	0.138

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession	Type		Chr	Start	End	Strand
OR10G9.aApr07-unspliced	main_exon	CDS	chr11	124,023,013	124,023,945	+
OR10G9.aApr07-unspliced	main_exon	3UTR	chr11	124,023,945	124,023,948	+

HORDE

Search Olfactory receptors

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