OR11H3P Olfactory Receptor
Gene Symbol | OR11H3P1 (View this gene in GeneCards) |
Family | 11 |
Subfamily | H |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR15-6, HsOR15.1.4P, ORL3730 |
External Ids | HGNC: 15367 GeneBank: BK004798, NG_004166 ORDB: ORL3730 |
Build #39 labels | OR11H3P |
Chromosomal location | 15:22,009,550-22,010,496 (-) |
Cluster | 15@22 |
Synteny | CLIC#32 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR11H1 | 91.14% | 316 |
OR11H2 | 90.82% | 316 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR11H12 | 81% | 311 |
Mouse | Or11h6 | 65% | 299 |
Rat | Or11j4 | 62% | 303 |
Cow | OR11H12 | 81% | 316 |
Cow | OR11H12B | 80% | 316 |
Orang | OR11H12 | 91% | 316 |
Orang | OR11H12CP | 88% | 316 |
Orang | OR11H12D | 88% | 316 |
Horse | OR11H12 | 84% | 316 |
Chimp | OR11H12FP | 97% | 316 |
Expression evidences
Source | Accession |
---|---|
ESTs | DB051929 |
mRNA | BC062994 |
Sequence information
Nucleotide sequence |
ATGAATGTCTCTGAGCCAAATTCCAGCTTTGCTTTAGTAAATGAATTTATACTCCAAGAT TTATCTTTTGAGTGGACAATTCAGATCTTCCTCTTCTCACTCTTCACTACAACATATGCA CTGACCATAACAGGAAATGGAGCCATTGCTTGCGCCCTGTGGTGTGACCGGCGACGTCAC ACTCCCATGTACATGTTCCTGGGAAATTTCTCCTTTTTAGAGATATGGTATGTCTCTTCT ACAGTTCCCAAGATGTTGGTCAACTTCCTTTCAGAGAAAAAAACCATCTCCTTTGCTGGA TGTTTTCTCCAATTTTATTTCTTCTTCTCTTTGGGTACATCTGAATGCTTGATTTTGACT GTGATGGCCTTTGATCAGTACCTTGTTATCTGCCATCCCTTGCACTATCCTAATAAATCA TGACTGGGCATCTCTGTGCCAAACTGGTCATACTGTGCTGGGTTTGTGGATTTCTGTGTT TCCTGATCCCCACTGTTCTCATCTCTCAGATGCCCTTCTGTGGTCCAAACATTAATGACC ATGTTGTGTGTGACCCAGGGCCACTATTTGCATTGGCTTGTGTCTCTGCCCCAAGAATCC AACTGTTTTGCTACACTCTAAGCTCATTAGTTATTTTTGGTAACTTCCTCTTTATTATTG GATCCTATACTCTTGTCCTGAAAGCTGTGTTGGGTATGCCTTCGAGCACTGGGAAACATA AAGCCTTCTCTACCTGTGGGTCTCATTTGGCTGTGGTATCACTGTTCTATGGCTCTCTTA TGGTCATGTGTGTGAGTCCAGGACTTGGACACTCTATGGGGATGCAGAAAATCAAAACTT TGTTCTATGCTATGGTGACCCCACTCTTCAATCCCCTTATCTATAGCCTCCAGAATAAGG AGATAAAGGCAGCCCTGAGGAAAGTTCTGGGGAGTTCCAACATAATC |
Conceptual translation |
MNVSEPNSSFALVNEFILQDLSFEWTIQIFLFSLFTTTYALTITGNGAIACALWCDRRRH TPMYMFLGNFSFLEIWYVSSTVPKMLVNFLSEKKTISFAGCFLQFYFFFSLGTSECLILT VMAFDQYLVICHPLHY/XIMTGHLCAKLVILCWVCGFLCFLIPTVLISQMPFCGPNIN DHVVCDPGPLFALACVSAPRIQLFCYTLSSLVIFGNFLFIIGSYTLVLKAVLGMPSSTGK HKAFSTCGSHLAVVSLFYGSLMVMCVSPGLGHSMGMQKIKTLFYAMVTPLFNPLIYSLQN KEIKAALRKVLGSSNII Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
15 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI) | |
15 | 22,009,906 | 22,009,906 | SNP | G/A | 1000GP (CHBJPT) | |
15 | 22,009,911 | 22,009,911 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
15 | 22,009,929 | 22,009,929 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
15 | 22,009,984 | 22,009,984 | SNP | G/A | 1000GP (CHBJPT) | |
15 | 22,010,213 | 22,010,213 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
15 | 22,010,328 | 22,010,328 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
15 | 22,010,359 | 22,010,359 | SNP | A/G | 1000GP (CHBJPT) | |
15 | 22,010,382 | 22,010,382 | SNP | A/T | 1000GP (CEU, CHBJPT) | |
15 | 22,297,514 | 22,297,514 | SNP | T/C | rs3910009 (DbSNP) | |
15 | 22,297,543 | 22,297,543 | SNP | T/C | rs4454929 (DbSNP) | |
15 | 22,297,583 | 22,297,583 | SNP | A/G | rs12438559 (DbSNP) | |
15 | 22,297,862 | 22,297,862 | SNP | C/G | rs8025192 (DbSNP) | |
15 | 22,297,880 | 22,297,880 | SNP | A/G | rs11853641 (DbSNP) | |
15 | 22,298,024 | 22,298,024 | SNP | A/G | rs28631648 (DbSNP) | |
15 | 22,298,164 | 22,298,164 | SNP | T/G | rs1816291 (DbSNP) | |
15 | 22,298,230 | 22,298,230 | SNP | A/T | rs8036276 (DbSNP) | |
15 | 22,298,279 | 22,298,279 | SNP | A/G | rs11856712 (DbSNP) | |
15 | 22,298,310 | 22,298,310 | SNP | A/G | rs2808172 (DbSNP) | |
15 | 22,298,333 | 22,298,333 | SNP | A/T | rs1816290 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 23 (Hasin) | |||
15 | 20,003,725 | 23,814,757 | CopyNumber | Variation_3951 (DGV) |
15 | 20,143,651 | 23,690,892 | CopyNumber | Variation_3070 (DGV) |
15 | 20,161,372 | 22,351,239 | CopyNumber | Variation_49466 (DGV) |
15 | 20,161,372 | 22,368,110 | CopyNumber | Variation_49467 (DGV) |
15 | 20,161,372 | 22,449,059 | CopyNumber | Variation_49468 (DGV), Variation_49469 (DGV) |
15 | 20,161,372 | 22,755,185 | CopyNumber | Variation_49470 (DGV) |
15 | 20,161,372 | 23,226,254 | CopyNumber | Variation_49471 (DGV) |
15 | 20,167,086 | 22,588,036 | CopyNumber | Variation_8779 (DGV) |
15 | 20,167,086 | 22,862,959 | CopyNumber | Variation_34576 (DGV) |
15 | 20,167,086 | 22,869,764 | CopyNumber | Variation_8781 (DGV) |
15 | 20,167,086 | 23,222,284 | CopyNumber | Variation_9251 (DGV), Variation_34504 (DGV) |
15 | 20,167,086 | 23,854,707 | CopyNumber | Variation_8784 (DGV) |
15 | 20,167,089 | 22,588,036 | CopyNumber | Variation_9250 (DGV) |
15 | 20,167,089 | 22,869,763 | CopyNumber | Variation_34665 (DGV) |
15 | 20,167,089 | 23,222,284 | CopyNumber | Variation_34608 (DGV) |
15 | 20,171,787 | 22,646,418 | CopyNumber | Variation_31980 (DGV) |
15 | 20,198,198 | 22,591,284 | CopyNumber | Variation_30670 (DGV) |
15 | 20,266,957 | 22,674,466 | CopyNumber | Variation_0318 (DGV) |
15 | 20,397,403 | 22,698,551 | CopyNumber | Variation_7046 (DGV) |
15 | 20,422,586 | 22,588,019 | CopyNumber | Variation_34663 (DGV) |
15 | 20,541,678 | 22,368,898 | CopyNumber | Variation_58702 (DGV) |
15 | 20,610,110 | 22,575,858 | Inversion | Variation_0443 (DGV) |
15 | 20,625,544 | 22,559,977 | Inversion | Variation_0444 (DGV) |
15 | 20,851,594 | 22,588,036 | CopyNumber | Variation_34545 (DGV) |
15 | 20,852,150 | 23,222,284 | CopyNumber | Variation_8785 (DGV) |
15 | 20,879,638 | 22,777,875 | CopyNumber | Variation_9254 (DGV) |
15 | 20,935,075 | 22,777,875 | CopyNumber | Variation_8783 (DGV) |
15 | 21,012,524 | 23,222,284 | CopyNumber | Variation_9256 (DGV) |
15 | 21,054,356 | 22,453,425 | CopyNumber | Variation_76814 (DGV), Variation_87462 (DGV) |
15 | 21,072,035 | 22,588,019 | CopyNumber | Variation_34607 (DGV) |
15 | 21,097,124 | 22,449,059 | CopyNumber | Variation_9742 (DGV) |
15 | 21,200,251 | 22,588,036 | CopyNumber | Variation_8786 (DGV) |
15 | 21,276,422 | 22,453,425 | CopyNumber | Variation_87468 (DGV) |
15 | 21,362,809 | 22,453,425 | CopyNumber | Variation_76815 (DGV) |
15 | 22,262,145 | 22,453,425 | CopyNumber | Variation_76813 (DGV) |
15 | 22,262,185 | 22,336,007 | CopyNumber | Variation_72150 (DGV) |
15 | 22,262,185 | 22,373,349 | CopyNumber | Variation_72167 (DGV) |
15 | 22,262,185 | 22,596,129 | CopyNumber | Variation_72162 (DGV) |
15 | 22,265,649 | 22,591,752 | CopyNumber | Variation_37535 (DGV), Variation_37626 (DGV) |
15 | 22,286,537 | 22,453,425 | CopyNumber | Variation_87461 (DGV) |
15 | 22,287,131 | 22,399,235 | CopyNumber | Variation_59598 (DGV) |
15 | 22,294,228 | 22,311,474 | CopyNumber | Variation_72148 (DGV) |
15 | 22,295,501 | 22,298,547 | CopyNumber | #161 (Waszak) |
15 | 22,298,201 | 22,343,860 | CopyNumber | Variation_66725 (DGV) |
15 | 22,298,273 | 22,298,495 | Del(-8) | #24(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.