OR12D1P Olfactory Receptor
| Gene Symbol | OR12D1P1 (View this gene in GeneCards) |
| Family | 12 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | hs6M1-19, OR6-29, AC004174-B, dJ994E9.7, HsOR6.3.20P, ORL3158 |
| External Ids | HGNC: 8177 GeneBank: AB065471, AF546322-AF546335, BK004678, NG_002196 ORDB: ORL3158 |
| Build #39 labels | OR12D1P |
| Chromosomal location | 6:29,417,280-29,418,208 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks | Segregating Pseudo Gene, a polymorphism of 16 bp del at positions 556-572 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR12D2 | 87.91% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AQ1 | 47% | 310 |
| Mouse | Or12d2 | 79% | 308 |
| Rat | Or12d2b | 76% | 308 |
| Cow | OR12D2IP | 81% | 308 |
| Cow | OR12D2 | 81% | 308 |
| Cow | OR12D2F | 80% | 306 |
| Orang | OR12D2P | 86% | 306 |
| Horse | OR12D2L | 84% | 308 |
| Horse | OR12D2N | 84% | 308 |
| Horse | OR12D2 | 85% | 305 |
| Horse | OR12D2J | 83% | 306 |
| Chimp | OR12D1 | 96% | 315 |
Sequence information
| Nucleotide sequence |
ATGCTGAATACAACCTCAGTCACTGAATTTCTCCTTTTGGGAGTGACAGACATTCAAGAA CTGCAGCCTTTTCTCTTCGTTGTTTTCCTTACCATCTACTTCATCAGTGTGGCTGGGAAT GGAGCCATTCTGATGATTGTCATCTCTGATCCTAGACTCCATTCCCCTATGTATTTCTTC CTGGGAAACCTGTCCTGCCTGGACATCTGCTACTCCAGCGTAACACTGCCAAAAATGCTG CAGAACTTCCTCTCTGCACACAAAGCAATTTCTTTCTTGGGATGCATAAGCCAACTCCAT TTCTTCCACTTCCTGGGCAGCACAGAGGCCATGTTGTTGGCCGTGATGGCATTTGACCGC TTTGTGGCTATTTGCAAGCCACTTCGCTACACTGTCATTATGAACCCTCAGCTCTGTACC CAGATGGCCATCACAATCTGGATGATTGGTTTTTTCCATGCCCTGCTGCACTCCCTAATG ACCTCTCGCTTGAACTTCTGTGGTTCTAACCGTATCTATCACTTCTTCTGTGATGTGAAG CCATTGCTAAAGCTGAGCTTAATCAGTGGCTGCTCAGTACTGTCACAGGGACAATCGCCA TGGGCCCCTTCTTTCTCACATTACTCTCCTATTTCTACATTATCACCCATCTCTTCTTCA AGACTCATTCTTTTAGCATGCTCCGCAAAGCACTGTCCACTTGTGCCTCCCACTTCATGG TAGTTATTCTTTTGTATGCACCTGTTCTCTTCACCTATATTCATCATGCCTCAGGGACCT CCATGGACCAGGACCGGATCACTGCCATCATGTATACTGTGGTCACTCCAGTACTAAACC CACTGATCTACACTTTGAGGAACAAGGAAGTGAAAGGGGCCTTTAATAGAGCAATGAAAA GGTGGCTTTGGCCTAAAGAAATCTTGAAG |
| Conceptual translation |
MLNTTSVTEFLLLGVTDIQELQPFLFVVFLTIYFISVAGNGAILMIVISDPRLHSPMYFF LGNLSCLDICYSSVTLPKMLQNFLSAHKAISFLGCISQLHFFHFLGSTEAMLLAVMAFDR FVAICKPLRYTVIMNPQLCTQMAITIWMIGFFHALLHSLMTSRLNFCGSNRIYHFFCDVK PLLKLS/NQWLLSTVTGTIAMGPFFLTLLSYFYIITHLFFKTHSFSMLRKALSTCASHF MVVILLYAPVLFTYIHHASGTSMDQDRITAIMYTVVTPVLNPLIYTLRNKEVKGAFNRAM KRWLWPKEILK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 6 | 29,385,195 | 29,385,195 | SNP | G/T | rs17183960 (DbSNP) | |
| 6 | 29,385,198 | 29,385,198 | SNP | A/G | rs17839876 (DbSNP) | |
| 6 | 29,385,223 | 29,385,223 | SNP | C/T | rs17183967 (DbSNP) | |
| 6 | 29,385,237 | 29,385,237 | SNP | C/T | rs3131024 (DbSNP) | |
| 6 | 29,385,275 | 29,385,275 | SNP | C/G | rs17177563 (DbSNP) | |
| 6 | 29,385,395 | 29,385,395 | SNP | C/G | rs17177570 (DbSNP) | |
| 6 | 29,385,415 | 29,385,415 | SNP | G/T | rs17177577 (DbSNP) | |
| 6 | 29,385,418 | 29,385,418 | SNP | G/C | rs17177584 (DbSNP) | |
| 6 | 29,385,531 | 29,385,531 | SNP | T/C | rs17183974 (DbSNP) | |
| 6 | 29,385,567 | 29,385,567 | SNP | C/T | rs16894869 (DbSNP) | |
| 6 | 29,385,610 | 29,385,609 | Ins(16) | -/CTGGCCTGTGGGAACA | rs66589491 (DbSNP) | |
| 6 | 29,385,612 | 29,385,611 | Ins(16) | -/GCCTGTGGGAACACTG | rs28993580 (DbSNP) | |
| 6 | 29,385,613 | 29,385,612 | Ins(16) | -/GCCTGTGGGAACACTG | rs67722003 (DbSNP) | |
| 6 | 29,385,772 | 29,385,772 | SNP | C/G | rs1011985 (DbSNP) | |
| 6 | 29,385,821 | 29,385,821 | SNP | C/T | rs17183981 (DbSNP) | |
| 6 | 29,385,856 | 29,385,856 | SNP | C/T | rs11756485 (DbSNP) | |
| 6 | 29,385,932 | 29,385,931 | Ins(1) | -/G | rs35350646 (DbSNP) | |
| 6 | 29,417,312 | 29,417,312 | SNP | C/A | 1000GP (CEU) | |
| 6 | 29,417,346 | 29,417,346 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 29,417,421 | 29,417,421 | SNP | A/G | 1000GP (CHBJPT) | |
| 6 | 29,417,460 | 29,417,460 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,417,641 | 29,417,641 | SNP | T/G | 1000GP (CHBJPT) | |
| 6 | 29,417,770 | 29,417,770 | SNP | T/C | 1000GP (CHBJPT) | |
| 6 | 29,417,790 | 29,417,790 | SNP | C/T | 1000GP (CHBJPT) | |
| 6 | 29,417,995 | 29,417,995 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,418,057 | 29,418,057 | SNP | C/T | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.