OR13F1 Olfactory Receptor
| Gene Symbol | OR13F11 (View this gene in GeneCards) |
| Family | 13 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.27 (functional) |
| Aliases | OR9-6, HsOR9.4.1, ORL3229 |
| External Ids | HGNC: 14723 GeneBank: AB065715, BK004412, NM_001004485 ORDB: ORL3229 |
| Build #39 labels | OR13F1 |
| Chromosomal location | 9:104,504,263-104,505,219 (+) |
| Cluster | 9@107 |
| Synteny | CLIC#19 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2K2 | 65.12% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR13F1B | 85% | 308 |
| Mouse | Or13f5 | 80% | 319 |
| Rat | Or13f5b | 79% | 319 |
| Cow | OR13F1B | 80% | 308 |
| Cow | OR13F1C | 81% | 275 |
| Orang | OR2K2P | 62% | 305 |
| Horse | OR13F8 | 79% | 319 |
| Horse | OR13F1D | 82% | 308 |
| Chimp | OR2K2 | 65% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529294 |
| GNF Atlas2 | gnf1h05175_at |
Sequence information
| Nucleotide sequence |
ATGTTCCCGGCAAATTGGACATCTGTAAAAGTATTTTTCTTCCTGGGATTTTTTCACTAC CCCAAAGTTCAGGTCATCATATTTGCGGTGTGCTTGCTGATGTACCTGATCACCTTGCTG GGCAACATTTTTCTGATCTCCATCACCATTCTAGATTCCCACCTGCACACCCCTATGTAC CTCTTCCTCAGCAATCTCTCCTTTCTGGACATCTGGTACTCCTCTTCTGCCCTCTCTCCA ATGCTGGCAAACTTTGTTTCAGGGAGAAACACTATTTCATTCTCAGGGTGCGCCACTCAG ATGTACCTCTCCCTTGCCATGGGCTCCACTGAGTGTGTGCTCCTGCCCATGATGGCATAT GACCGGTATGTGGCCATCTGCAACCCCCTGAGATACCCTGTCATCATGAATAGGAGAACC TGTGTGCAGATTGCAGCTGGCTCCTGGATGACAGGCTGTCTCACTGCCATGGTGGAAATG ATGTCTGTGCTGCCACTGTCTCTCTGTGGTAATAGCATCATCAATCATTTCACTTGTGAA ATTCTGGCCATCTTGAAATTGGTTTGTGTGGACACCTCCCTGGTGCAGTTAATCATGCTG GTGATCAGTGTACTTCTTCTCCCCATGCCAATGCTACTCATTTGTATCTCTTATGCATTT ATCCTCGCCAGTATCCTGAGAATCAGCTCAGTGGAAGGTCGAAGTAAAGCCTTTTCAACG TGCACAGCCCACCTGATGGTGGTAGTTTTGTTCTATGGGACGGCTCTCTCCATGCACCTG AAGCCCTCCGCTGTAGATTCACAGGAAATAGACAAATTTATGGCTTTGGTGTATGCCGGA CAAACCCCCATGTTGAATCCTATCATCTATAGTCTACGGAACAAAGAGGTGAAAGTGGCC TTGAAAAAATTGCTGATTAGAAATCATTTTAATACTGCCTTCATTTCCATCCTCAAA |
| Conceptual translation |
MFPANWTSVKVFFFLGFFHYPKVQVIIFAVCLLMYLITLLGNIFLISITILDSHLHTPMY LFLSNLSFLDIWYSSSALSPMLANFVSGRNTISFSGCATQMYLSLAMGSTECVLLPMMAY DRYVAICNPLRYPVIMNRRTCVQIAAGSWMTGCLTAMVEMMSVLPLSLCGNSIINHFTCE ILAILKLVCVDTSLVQLIMLVISVLLLPMPMLLICISYAFILASILRISSVEGRSKAFST CTAHLMVVVLFYGTALSMHLKPSAVDSQEIDKFMALVYAGQTPMLNPIIYSLRNKEVKVA LKKLLIRNHFNTAFISILK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 9 | 100 | -100 | NS | T/C | F/L | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
| 9 | 100 | -100 | SYN | C/G | A/A | 1000GP (YRI, YRI) |
| 9 | 104,504,315 | 104,504,315 | NS | T/C | F/S | 1000GP (CEU, CHBJPT) |
| 9 | 104,504,345 | 104,504,345 | NS | T/C | F/S | 1000GP (CHBJPT) |
| 9 | 104,504,493 | 104,504,493 | SYN | C/G | A/A | 1000GP (CEU, CHBJPT) |
| 9 | 104,504,552 | 104,504,552 | NS | G/A | C/Y | 1000GP (CEU) |
| 9 | 104,504,563 | 104,504,563 | NS | A/G | M/V | 1000GP (CEU, CHBJPT) |
| 9 | 104,504,662 | 104,504,662 | NS | G/A | V/I | 1000GP (CEU, CHBJPT) |
| 9 | 104,505,023 | 104,505,023 | NS | C/T | T/M | 1000GP (CEU, CHBJPT) |
| 9 | 104,505,071 | 104,505,071 | NS | T/C | I/T | 1000GP (CEU, CHBJPT) |
| 9 | 107,266,577 | 107,266,577 | NS | C/T | L/F | rs28553883 (DbSNP) |
| 9 | 107,266,596 | 107,266,596 | NS | C/T | S/F | rs7049042 (DbSNP) |
| 9 | 107,266,694 | 107,266,694 | SYN | C/T | L/L | rs61748307 (DbSNP) |
| 9 | 107,266,742 | 107,266,742 | NS | A/T | T/S | rs12380064 (DbSNP) |
| 9 | 107,266,774 | 107,266,774 | SYN | C/G | A/A | rs1949755 (DbSNP) |
| 9 | 107,266,813 | 107,266,813 | SYN | C/T | N/N | rs61754949 (DbSNP) |
| 9 | 107,266,824 | 107,266,824 | NS | C/T | S/F | rs7018553 (DbSNP) |
| 9 | 107,266,844 | 107,266,844 | NS | G/A | V/M | rs1403812 (DbSNP) |
| 9 | 107,266,909 | 107,266,909 | SYN | A/G | R/R | rs41277751 (DbSNP) |
| 9 | 107,266,943 | 107,266,943 | NS | G/A | V/I | rs1403811 (DbSNP) |
| 9 | 107,267,236 | 107,267,235 | Ins(1) | -/G | rs35123854 (DbSNP) | |
| 9 | 107,267,304 | 107,267,304 | NS | C/T | T/M | rs7030820 (DbSNP) |
| 9 | 107,267,352 | 107,267,352 | NS | C/T | T/I | rs7847413 (DbSNP) |
| 9 | 107,267,420 | 107,267,420 | NS | C/T | R/W | rs7858601 (DbSNP) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| F12L | L15R | F18S | F28S | G88A | F94S | C97Y | M101V | V134I | C141S | T254M | I270T | I270M | R293W | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | F | L | S | F | G | F | C | V | I | C | M | I | I | R | 51.23 | 0.621 |
| 2 | F | L | S | F | G | F | C | V | I | C | T | T | I | R | 21.12 | 0.515 |
| 3 | F | L | F | F | G | F | C | M | V | C | T | I | I | R | 20.58 | 0.515 |
| 4 | F | L | S | F | G | F | C | V | I | C | T | I | I | R | 2.92 | 0.515 |
| 5 | F | L | S | S | G | F | C | V | I | C | T | I | I | R | 0.84 | 0.515 |
| 6 | L | L | F | F | G | F | C | M | V | C | T | I | I | R | 0.77 | 0.515 |
| 7 | F | L | S | F | G | F | Y | V | I | C | M | I | I | R | 0.54 | 0.993 |
| 8 | F | L | S | F | G | F | C | V | I | C | T | T | I | W | 0.46 | 0.515 |
| 9 | F | L | S | F | G | F | C | V | I | C | T | T | M | R | 0.46 | 0.515 |
| 10 | F | L | S | F | G | F | C | M | I | C | M | I | I | R | 0.15 | 0.621 |
| 11 | F | R | S | F | G | F | C | V | I | C | T | T | I | R | 0.15 | 0.515 |
| 12 | F | L | S | F | G | S | C | V | I | C | M | I | I | R | 0.15 | 0.621 |
| 13 | F | L | S | F | G | F | C | V | I | C | M | T | I | R | 0.08 | 0.621 |
| 14 | F | L | S | F | G | F | C | V | I | C | M | T | M | R | 0.08 | 0.621 |
| 15 | F | L | S | F | A | F | C | V | I | C | M | I | I | R | 0.08 | 0.621 |
| 16 | F | L | F | F | G | F | C | V | I | C | M | I | I | R | 0.08 | 0.621 |
| 17 | F | L | F | F | G | S | C | V | I | C | M | I | I | R | 0.08 | 0.621 |
| 18 | F | L | S | F | G | F | C | V | I | C | M | T | I | W | 0.08 | 0.621 |
| 19 | F | L | S | F | G | F | C | V | V | C | M | I | I | R | 0.08 | 0.621 |
| 20 | F | L | S | F | G | F | C | V | I | S | T | T | I | R | 0.08 | 0.515 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR13F1.aApr07-unspliced | main_exon | CDS | chr9 | 104,504,263 | 104,505,219 | + |
| 3UTR | chr9 | 104,505,219 | 104,505,222 | + | ||