OR1AA1P Olfactory Receptor
Gene Symbol | OR1AA1P1 (View this gene in GeneCards) |
Family | 1 |
Subfamily | AA |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsORX.1.4P, ORL4074 |
External Ids | HGNC: 14750 GeneBank: NG_002238 ORDB: ORL4074 |
Build #39 labels | OR1AA1P |
Chromosomal location | X:131,424,301-131,425,268 (+) |
Cluster | X@131a |
Synteny | CLIC#48 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR1F1 | 50% | 310 |
OR1J2 | 47.92% | 313 |
OR1J4 | 48.06% | 310 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR1AG1P | 64% | 313 |
Mouse | Or1aa2 | 69% | 312 |
Rat | Or1aa2 | 67% | 313 |
Cow | OR1AA3 | 66% | 313 |
Orang | OR1F1 | 49% | 314 |
Horse | OR1AA4P | 63% | 325 |
Chimp | OR1F1P | 51% | 306 |
Sequence information
Nucleotide sequence |
ATGCACCAAGGAAATTGAACTACTGTCTCTAAATTCTTTCTCCTGGGAATCACAACAAAG CCTAAAGAGCAGCAGTTTATCTTCATGCTGTTTCTATGCACGTATCTGGTCACTATGGTA AGAAATTTACTTATCATCCTGGCCGTTGTCAGTGATGCTCACCTCCATGGCCCCATATAT TTCTTCCTTGCCAATCTATCTTTCACTAACGTCTGCATCACAACCACTACAGTCCCCAAA ATCTTGGCAGATATTCAAAGCCAGAATTCAACCATATCCTTTGAAGGATGCCCTGCACAA ATGTAGTTTTAAATATTCCTGGTGGATCTGGATAATTTCCTATTGGTAGACATGGCATAT AATTGATACATTGCCATCTGTCACCCATTACACTATATGTGGTAGTACTGAGTCCCAAGA ACTGTGCCCTGTTGGTTGTGACTCCATGGGTTATCTCCAACCTTGTCTCAATACTGCATC TCAGTCTGCTAAGCCACTTAACTTTCTGTGATTTCACATATCTTCTATGACCTGGAACCC ATTTTAGGGCTTGCTTGCTCAGACACCCAAATCAACAACTTGATAATTACTGCCATTGGG GAAGTAGTTATCTTCATCCCCTTTACCTTCACATTCTTGTCTCCTATGGCCTTATTGGCA GCACTATGCTTGGAGTTCCATCAGCCAAGGGGAAGTAGAAAACATTCTCTACATGTGGTT CCCATCTCTCAGTTGTGCCCCAGGTCTTCTATGGGTTCATCATTGGAGTCTACTTTCTCT CCTTTTTTGCCTACTCAGCAGAAAGGGATGAGGTAGCTGCTATCATGTATACAACTGTAA CTCACTTGATCAAATCATTTATCTGTAGTCTAAGGAACGAGGACATGAAAGGAGCACTGA GGAGACCACTCAGCAGACAAGGTTTTTCTGGAGTGGTGAGCCCTGCCATAGAGATTCTCG TATTAACC |
Conceptual translation |
MHQGNXTVSKFFLLGITTKPKEQQFIFMLFLCTYLVTMVRNLLIILAVVSDAHLHGPIY FFLANLSFTNVCITTTTVPKILADIQSQNSTISFEGCPAQMXXFLVDLDNFLLVDMAY NXIAICHPLHY/VVVLSPKNCALLVVTPWVISNLVSILHLSLLSHLTFC\SHIFYDL EPILGLACSDTQINNLIITAIGEVVIFIPFT/HILVSYGLIGSTMLGVPSAKGKXTFS TCGSHLSVVPQVFYGFIIGVYFLSFFAYSAERDEVAAIMYTTVTHLIKSFICSLRNEDMK GALRRPLSRQGFSGVVSPAIEILVLT Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
X | 130,558,375 | 130,558,375 | SNP | C/T | rs56079051 (DbSNP) | |
X | 130,558,782 | 130,558,782 | SNP | A/G | rs17276881 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 145 (Hasin) | |||
X | 130,558,175 | 130,561,242 | Deletion | #322 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.