Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR1B1 Olfactory Receptor

Gene Symbol OR1B11 (View this gene in GeneCards)
Family 1
Subfamily B
Pseudogene No
CORP pseudogene probability score 0.28 (functional)
Aliases hRPK-465_F_21, OR9-26, OR9-B, HsOR9.6.9, ORL3234
External Ids HGNC: 8181   GeneBank: AB065723, BK004229, NM_001004450   ORDB: ORL3234   
Build #39 labels OR1B1
Chromosomal location 9:122,628,582-122,629,535 (-)
Cluster 9@125
Synteny CLIC#21
Remarks Segregating Pseudo Gene, a nonsynonymous SNP rs1476860 (AA change=R/* )

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR1E1 46.69% 302
OR1F1 45.57% 305
OR1K1 47.1% 310

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR1K1 47% 316
Chimp CONTIG771.69-147 99% 145
Mouse Or1b1 87% 316
Rat Or1b1 85% 317
Cow OR1B1 81% 315

Expression evidences

Source Accession
ESTs EG357707
mRNA AB529298
GNF Atlas2 gnf1h10932_at

Sequence information

Nucleotide sequence ATGATGAGCTTTGCCCCTAATGCTTCACACTCTCCGGTTTTTTTGCTCCTTGGGTTCTCG
AGAGCTAACATCTCCTACACTCTCCTCTTCTTCCTGTTCCTGGCTATTTACCTGACCACC
ATACTGGGGAATGTGACACTGGTGCTGCTCATCTCCTGGGACTCCAGACTGCACTCACCC
ATGTATTATCTGCTTCGTGGCCTCTCTGTGATAGACATGGGGCTATCCACAGTTACACTG
CCCCAGTTGCTGGCCCATTTGGTCTCTCATTACCCAACCATTCCTGCTGCCCGCTGCTTG
GCTCAGTTCTTTTTCTTCTATGCATTTGGGGTTACAGATACACTTGTCATTGCTGTCATG
GCTCTGGATCGCTATGTGGCCATCTGTGACCCCCTGCACTATGCTTTGGTAATGAATCAC
CAACGGTGTGCCTGCTTACTAGCCTTGAGCTGGGTGGTGTCCATACTGCACACCATGTTG
CGTGTGGGACTCGTCCTGCCTCTTTGCTGGACTGGGGATGCTGGGGGCAACGTTAACCTT
CCTCACTTCTTTTGTGACCACCGGCCACTTCTGCGAGCCTCTTGTTCTGACATACATTCT
AATGAGCTGGCCATATTCTTTGAGGGTGGCTTCCTTATGCTGGGCCCCTGTGCCCTCATT
GTACTCTCTTATGTCCGAATTGGGGCCGCTATTCTACGTTTGCCTTCAGCTGCTGGTCGC
CGCCGAGCAGTCTCCACCTGTGGATCCCACCTCACCATGGTTGGTTTCCTCTACGGCACC
ATCATTTGTGTCTACTTCCAGCCTCCCTTCCAGAACTCTCAGTATCAGGACATGGTGGCT
TCAGTAATGTATACTGCCATTACACCTTTGGCCAACCCATTTGTGTATAGCCTCCACAAT
AAGGATGTCAAGGGTGCACTCTGCAGGCTGCTTGAATGGGTGAAGGTAGACCCC
Conceptual translation MMSFAPNASHSPVFLLLGFSRANISYTLLFFLFLAIYLTTILGNVTLVLLISWDSRLHSP
MYYLLRGLSVIDMGLSTVTLPQLLAHLVSHYPTIPAARCLAQFFFFYAFGVTDTLVIAVM
ALDRYVAICDPLHYALVMNHQRCACLLALSWVVSILHTMLRVGLVLPLCWTGDAGGNVNL
PHFFCDHRPLLRASCSDIHSNELAIFFEGGFLMLGPCALIVLSYVRIGAAILRLPSAAGR
RRAVSTCGSHLTMVGFLYGTIICVYFQPPFQNSQYQDMVASVMYTAITPLANPFVYSLHN
KDVKGALCRLLEWVKVDP

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
9 100 -100 nonsense SNP G/A R/* 1000GP (YRI, YRI)
9 100 -100 NS A/C V/G 1000GP (YRI, YRI, YRI, YRI, YRI)
9 100 -100 SYN G/A F/F 1000GP (YRI, YRI, YRI)
9 122,628,595 122,628,595 NS A/C V/G 1000GP (CEU, CHBJPT)
9 122,628,747 122,628,747 NS A/C C/W 1000GP (CEU, CHBJPT)
9 122,628,848 122,628,848 NS C/T A/T 1000GP (CEU, CHBJPT)
9 122,628,962 122,628,962 nonsense SNP G/A R/* 1000GP (CEU, CHBJPT)
9 122,629,044 122,629,044 SYN G/A L/L 1000GP (CHBJPT)
9 122,629,090 122,629,090 NS A/G L/S 1000GP (CEU, CHBJPT)
9 122,629,130 122,629,130 SYN A/G L/L 1000GP (CEU, CHBJPT)
9 122,629,398 122,629,398 SYN T/C T/T 1000GP (CEU, CHBJPT)
9 122,629,452 122,629,452 SYN G/C L/L 1000GP (CEU)
9 125,390,874 125,390,874 NS C/A G/V rs1556189 (DbSNP)
9 125,391,012 125,391,012 NS C/G R/P rs41316978 (DbSNP)
9 125,391,026 125,391,026 NS A/C C/W rs1476858 (DbSNP)
9 125,391,127 125,391,127 NS C/T A/T rs1476859 (DbSNP)
9 125,391,241 125,391,241 nonsense SNP A/G */R rs1476860 (DbSNP)
9 125,391,369 125,391,369 NS G/A S/L rs1536929 (DbSNP)
9 125,391,409 125,391,409 SYN G/A L/L rs1536928 (DbSNP)
9 125,391,677 125,391,677 SYN C/T T/T rs12347681 (DbSNP)
9 125,391,777 125,391,776 Ins(1) -/A rs72541201 (DbSNP)
9 125,391,778 125,391,777 Ins(1) -/A rs11421222 (DbSNP)
9 125,391,779 125,391,778 Ins(1) -/A rs67290601 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 163 (Hasin)
9 125,388,861 125,391,914 Deletion #195 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

V314G P268R C263W S249P A230T R226* R192* L149S R124C D54E % Freq CORP
1 G P W S A R R S R D 34.41 0.531
2 G P W S T R * S R D 20.43 1.200
3 V P C S A R R L R D 19.35 0.531
4 G P W S T R * L R D 10.22 1.200
5 G P W S T R R S R D 7.83 0.531
6 G P C S A R R L R D 5.61 0.531
7 G R W S A R R S R D 0.54 0.307
8 G P W S T R * S R E 0.46 1.200
9 G P W S A * R S R D 0.15 1.200
10 G P C P A R R S R D 0.15 0.158
11 G P C S T R R S R D 0.15 0.531
12 G P W S T R R L R D 0.15 0.531
13 G P W S A R R S C D 0.08 0.953
14 G P W S T R * L C D 0.08 1.200
15 V P C S T R R S R D 0.08 0.531
16 G P W S A R * S R D 0.08 1.200
17 V P C S A R R S R D 0.08 0.531
18 G P W S T R * S C D 0.08 1.200
19 V P W S T R * S R D 0.08 1.200

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR1B1.aApr07-unspliced main_exon 3UTR chr9 122,628,579 122,628,582 -
CDS chr9 122,628,582 122,629,535 -