OR1R1P Olfactory Receptor
| Gene Symbol | OR1R1P1 (View this gene in GeneCards) |
| Family | 1 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR17-1, OR17-21, HsOR17.1.13, ORL3750 |
| External Ids | HGNC: 8226 GeneBank: AB065573, AF087915, BK004550, NG_002302 ORDB: ORL3750 |
| Build #39 labels | OR1R2P, OR1R3P, OR1R1P |
| Chromosomal location | 17:3,385,930-3,386,871 (+) |
| Cluster | 17@3b |
| Synteny | CLIC#39 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR1F1 | 44.92% | 305 |
| OR1L4 | 45.15% | 299 |
| OR1L6 | 46.15% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR1R1 | 80% | 315 |
| Mouse | Or1r1 | 83% | 315 |
| Rat | Or1r1 | 80% | 315 |
| Cow | OR1R1 | 84% | 313 |
| Orang | OR1L6 | 46% | 299 |
| Horse | OR1AF1 | 48% | 304 |
| Chimp | OR1F1P | 46% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | DA732634 |
| GNF Atlas2 | gnf1h10742_at |
Sequence information
| Nucleotide sequence |
ATGGCTCCGACCAACCTCACATCTGCCCCCGTGTTCCTCCTCCTCGGCCTGGTGGACGGA ACAGACGCCCACCCGCTGCTGTTCCTGCTCTGCCTTGGCATCTATCTGCTCAACGCCCTG AGCAACCTGAGCATGGTGGCGCTGGTGAGATCCGACGGGGCCCTCCGCTCCCCCATGTAT TACTTCTTGGGTCACCTGAGCCTCGTGGACGTCTGCTTTACCACCGTCACGGTCCCCAGG CTGCTGGCCGGCCTGCTCCACCCGGGCCAGGCCATATCCTTCCAGGCGTGCTTTGCCGAG ATGTACTTCTTCGTGGCTCTGGGCATCACCGAGAGCTACCTCCTGGCGGCCATGTCCTAC GACCGCCCGACGGCGGCGTGCCGGCCCCTGCGCTACGGCGCGCTGGTGACGCCATGGCGC TGCGCCTCGCTGGTGCGTGCGTCGTGGGCCGTGACGCACCTGCACTCGCTGCTGCACACG CTGCTCCTCTCCGCGCTCTCCTACCCCTACCCCACCCCCGTGCGCCCCTTCTTTTGCGAC ATGACGGTGATGCTGAGCTTGGCGACCTCGGACACGTCCGCCGCGGAGACGGCCATCTTC TCCGAGGGCCTGGCCGTGGTGTTGGCCCCGCTGCTCCTCGTGTTCCTTTTCCTACGCGCG CATCCTGGTCGCGGTGCTCGGCTTGCCGGCGGCCGGCGCCGCGCCTTCTCCACCTGCGGG GCCCACCTAGTGGCGGTGGCGGTGGCGCTTTTCTTTGGCTCTGTCCTCTCCGTGTATTTC CCGCCGTCGTCTGCCTACTCAGCCCGCTACGACCGCCTGGCCAGCGTGGTCTACGCTGTC ATCACGCCGACCTTGAACCCTTTCATCAACAGCCTTCGCAACAAAGAGGTCAAGGGCGCC CTGAAAAGGGGGCTCAGATGGAGGGCTGCACCCCAAGAGGCG |
| Conceptual translation |
MAPTNLTSAPVFLLLGLVDGTDAHPLLFLLCLGIYLLNALSNLSMVALVRSDGALRSPMY YFLGHLSLVDVCFTTVTVPRLLAGLLHPGQAISFQACFAEMYFFVALGITESYLLAAMSY DRPTAACRPLRYGALVTPWRCASLVRASWAVTHLHSLLHTLLLSALSYPYPTPVRPFFCD MTVMLSLATSDTSAAETAIFSEGLAVVLAPLLLVFL\YARILVAVLGLP\P\RAFST CGAHLVAVAVALFFGSVLSVYFPPSSAYSARYDRLASVVYAVITPTLNPFINSLRNKEVK GALKRGLRWRAAPQEA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 17 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 17 | 3,289,284 | 3,289,283 | Ins(4) | -/CTGT | rs3833164 (DbSNP) | |
| 17 | 3,289,290 | 3,289,289 | Ins(4) | -/AGAC | rs34476178 (DbSNP) | |
| 17 | 3,289,291 | 3,289,290 | Ins(4) | -/AGAC | rs72149113 (DbSNP) | |
| 17 | 3,289,376 | 3,289,376 | SNP | T/C | rs227980 (DbSNP) | |
| 17 | 3,289,547 | 3,289,547 | SNP | A/C | rs61735160 (DbSNP) | |
| 17 | 3,289,567 | 3,289,567 | SNP | C/T | rs227979 (DbSNP) | |
| 17 | 3,289,590 | 3,289,590 | SNP | C/G | rs2931819 (DbSNP) | |
| 17 | 3,289,595 | 3,289,595 | SNP | G/T | rs61734059 (DbSNP) | |
| 17 | 3,289,661 | 3,289,661 | SNP | A/T | rs61734058 (DbSNP) | |
| 17 | 3,289,815 | 3,289,815 | SNP | A/G | rs61734055 (DbSNP) | |
| 17 | 3,289,910 | 3,289,910 | SNP | C/G | rs2956856 (DbSNP) | |
| 17 | 3,289,911 | 3,289,911 | SNP | C/G | rs2956855 (DbSNP) | |
| 17 | 3,289,912 | 3,289,912 | Del(1) | -/G | rs34179555 (DbSNP) | |
| 17 | 3,289,914 | 3,289,914 | SNP | C/G | rs8064456 (DbSNP) | |
| 17 | 3,289,962 | 3,289,961 | Ins(6) | -/GGCGGT | rs72061668 (DbSNP) | |
| 17 | 3,289,971 | 3,289,970 | Ins(6) | -/GTGGCG | rs56743096 (DbSNP) | |
| 17 | 3,386,082 | 3,386,082 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 17 | 3,386,273 | 3,386,273 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 17 | 3,386,296 | 3,386,296 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 17 | 3,386,666 | 3,386,666 | SNP | T/G | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 39 (Hasin) | |||
| 17 | 3,289,124 | 3,292,165 | Deletion | #307 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.