OR2A13P Olfactory Receptor
| Gene Symbol | OR2A13P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR7-13, HsOR7.6.16P, ORL3194 |
| External Ids | HGNC: 15083 GeneBank: AB065691, AF399460, BK004749, NG_004375 ORDB: ORL3194 |
| Build #39 labels | OR2A13P |
| Chromosomal location | 7:144,142,009-144,142,938 (+) |
| Cluster | 7@144 |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A2 | 84.36% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A13 | 84% | 306 |
| Mouse | Or2a52 | 78% | 310 |
| Rat | Or2a52 | 79% | 306 |
| Cow | OR2A13 | 82% | 306 |
| Orang | OR2A2P | 84% | 310 |
| Horse | OR2A13 | 82% | 310 |
| Horse | OR2A75 | 83% | 306 |
| Horse | OR2A73 | 83% | 306 |
| Horse | OR2A72 | 82% | 306 |
| Chimp | OR2A13 | 95% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529229 |
Sequence information
| Nucleotide sequence |
ATGGGAGTCAACCAATCATGGGTCACAGAATTCATCCTGGTGGGATTCCAGCTCAGTGCC GAGATGGAAGTGCTCCTCTTTTAGATCTTCTCCCTGTTATACATCTTCAGCCTGCTGGCA AATGGCATGATCTTGGGACTCATCTGTCTGGACCACATTCTGCCTACCCCCATGTACTTC TTCCTCTCACACCTGGCCATCATTGACATGTCCTATGCTTCCAACAATGTTCCCAAGATG TTGGCAAATCTGATGAACAAGAAAAGAACCATCTCCTTTCTTCCATGCATAATGCAGACC TATTTGCATTTCTCTTTTGCTGCTACAGAGTGTCTGATTTTGGTGGTGATGTCCTATGAT AGGTATGTGGCCATTTGCCACCCTCTCCAGTACACTGTCATCATGAGCTGGAGAGTGTGC ACGATCCTGGCTCTCACATCCTGGTCATGTGGGTTTGCCCTGTCCCTGGTACATGCAATT CTTCTTCTAAGGTTGCCGTTCTGTGGGCCCCGGGATGTGAACCACCTCTTCTGTGAAATT CTGTCTGTCCTCAAGCTGGCCTGTTCTGACACCTGGGTTAACCAAGTGGTCATATTTGCT ACCTGTGTGTTTGTCTTAGTTGGACCTCTTTGTTTGATGCTTGTCTCCTACATGCACATC CTCTGGGCCATCCTAAAGATCCAGACAAAGGAAGGCCGCATAAAGGCCTTCTCGACCTGC TCCTCCCACCTGTGTGTGGTTGGACTCTTCTTTGGCATAGCCATGGTGGTTTACATAGTC CCAGACTCTAATCAACGAGAGGAGCAGGAGAAAATGCTGTCCCTGTTTCACAGTGTCTTG AACCCAATTCTGAACCCCCTGATCTACAGTCTGAGGAATGCTCAGGTGAAGGGCGCCCTC CACAGAGCACTGCAGAGGACGCTGTCTATG |
| Conceptual translation |
MGVNQSWVTEFILVGFQLSAEMEVLLFXFSLLYIFSLLANGMILGLICLDHILPTPMYF FLSHLAIIDMSYASNNVPKMLANLMNKKRTISFLPCIMQTYLHFSFAATECLILVVMSYD RYVAICHPLQYTVIMSWRVCTILALTSWSCGFALSLVHAILLLRLPFCGPRDVNHLFCEI LSVLKLACSDTWVNQVVIFATCVFVLVGPLCLMLVSYMHILWAILKIQTKEGRIKAFSTC SSHLCVVGLFFGIAMVVYIVPDSNQREEQEKMLSLFHSVLNPILNPLIYSLRNAQVKGAL HRALQRTLSM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 143,839,275 | 143,839,275 | SNP | A/G | rs62482941 (DbSNP) | |
| 7 | 143,839,878 | 143,839,878 | SNP | A/G | rs61732625 (DbSNP) | |
| 7 | 143,839,516 | 143,839,516 | SNP | A/G | rs55979675 (DbSNP) | |
| 7 | 143,839,898 | 143,839,898 | SNP | A/G | rs61732618 (DbSNP) | |
| 7 | 143,839,360 | 143,839,360 | SNP | C/A | rs2699835 (DbSNP) | |
| 7 | 143,839,601 | 143,839,601 | SNP | C/T | rs61732173 (DbSNP) | |
| 7 | 143,839,476 | 143,839,476 | SNP | C/T | rs2684429 (DbSNP) | |
| 7 | 143,839,211 | 143,839,211 | SNP | G/T | rs56354727 (DbSNP) | |
| 7 | 143,839,605 | 143,839,605 | SNP | T/C | rs1919953 (DbSNP) | |
| 7 | 143,839,408 | 143,839,408 | SNP | T/C | rs1919954 (DbSNP) | |
| 7 | 144,142,315 | 144,142,315 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 7 | 144,142,512 | 144,142,512 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 7 | 144,142,857 | 144,142,857 | SNP | T/G | 1000GP (CHBJPT) | |
| 7 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,742,520 | 143,847,474 | CopyNumber | Variation_4570 (DGV) |
| 7 | 143,572,286 | 143,866,532 | CopyNumber | Variation_8581 (DGV) |
| 7 | 143,217,296 | 144,074,520 | CopyNumber | Variation_32962 (DGV) |
| 7 | 143,545,719 | 143,874,190 | CopyNumber | Variation_53583 (DGV) |
| 7 | 143,839,002 | 143,842,031 | Deletion | #269 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.