OR2A3P Olfactory Receptor
| Gene Symbol | OR2A3P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR7-14, OR7-15, AC004889-B, HsOR7.6.17P, ORL31202 |
| External Ids | HGNC: 8231 GeneBank: AB065480, AF399461, BK004422, BK004542, NG_004292 ORDB: ORL31202 |
| Build #39 labels | OR2A3P |
| Chromosomal location | 7:144,157,226-144,158,156 (+) |
| Cluster | 7@144 |
| Synteny | CLIC#16 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A13P | 75.16% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A58 | 79% | 310 |
| Mouse | Or2a52 | 72% | 310 |
| Rat | Or2a52 | 73% | 307 |
| Cow | OR2A64 | 74% | 307 |
| Orang | OR2A3BP | 94% | 309 |
| Horse | OR2A72 | 77% | 308 |
| Chimp | OR2A13 | 76% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10903_at |
Sequence information
| Nucleotide sequence |
ATGGGGGACAACCAATCACGGGTCACAGAATTCATCCTGGTTGGATTCCAGCTCAGTGTG GAGATGGAAGTGCTCCTCTTCTGGATCTTCTCCCTGTTATATCTCTTCAGCCTGCTGGCA AATGGCATGATCTTGGGGCTCATCTGTCTGGATCCCAGACTGCGCACCCCCATGTACTTC TTCCTGTCACACTTGGCCGTCATTGACATATACTATGCTTCCAGCAATTTGCTCAACATG CTGGAAAACCTAGTGAAACACAAAAAAAACTATCTCGTTCATCTCTTGCATTATGCAGAT GGCTTTGTATTTGACTTTTGCTGCTGCAGTGTGCATGATTTTGGTGGTGATGTCCTATGA CAGATTTGTGGCGATCTGCCATCCCCTGCATTACACTGTCATCATGAACTGGAGAGTGTG CACAGTACTGGCTATTACTTCCTGGGCATGTGGATTTTCCCTGGCCCTCATAAATCTAAT TCTCCTTCTAAGGCTGCCCTTCTGTGGGCCCCAGGAGGTGAACCACTTCTTCGGTGAAAT TCTGTCTGTCCTCAAACTGGCCTGTGCAGACACCTGGATTAATGAAATTTTTGTCTTTGC TGGTGGTGTGTTTGTCTTAGTCGGGCCCCTTTCCTTGATGCTGATCTCCTACATGCGCAT CCTCTTGGCCATCCTGAAGATCCAGTCAAAGGAGGGCCGCAAAAAAGCCTTTTCCACCTG CTCCTCCCACCTCTGTGTGGTTGGGCTTTACTTTGGCATGGCCATGGTGGTTTACCTGGT CCCAGACAACAGTCAACGACAGAAGCAGCAGAAAATTCTCACCCTGTTTTACAGCCTTTT CAACCCATTGCTGAACCCCCTCATCTACAGCCTGCGGAATGCTCAAGTGAAGGGTGCCTT ATACAGAGCACTGCAGAAAAAGAGGACCATG |
| Conceptual translation |
MGDNQSRVTEFILVGFQLSVEMEVLLFWIFSLLYLFSLLANGMILGLICLDPRLRTPMYF FLSHLAVIDIYYASSNLLNMLENL\NTKKTISFISCIMQMALYLTFAAAVCMILVVMSY DRFVAICHPLHYTVIMNWRVCTVLAITSWACGFSLALINLILLLRLPFCGPQEVNHFFGE ILSVLKLACADTWINEIFVFAGGVFVLVGPLSLMLISYMRILLAILKIQSKEGRKKAFST CSSHLCVVGLYFGMAMVVYLVPDNSQRQKQQKILTLFYSLFNPLLNPLIYSLRNAQVKGA LYRALQKKRTM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 7 | 100 | -100 | SNP | C/T | 1000GP (YRI) | |
| 7 | 143,854,580 | 143,854,580 | Del(1) | -/A | rs11324135 (DbSNP) | |
| 7 | 143,854,587 | 143,854,587 | rescued_Del(-1) | -/A | rs59973247 (DbSNP) | |
| 7 | 143,854,974 | 143,854,974 | SNP | C/T | rs59273599 (DbSNP) | |
| 7 | 143,855,048 | 143,855,048 | SNP | C/T | rs61732630 (DbSNP) | |
| 7 | 143,855,135 | 143,855,135 | SNP | G/T | rs61737634 (DbSNP) | |
| 7 | 143,855,227 | 143,855,227 | SNP | A/C | rs62483763 (DbSNP) | |
| 7 | 144,157,406 | 144,157,406 | SNP | T/C | 1000GP (CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 7 | 143,147,775 | 144,368,638 | CopyNumber | Variation_3708 (DGV) |
| 7 | 143,217,296 | 144,074,520 | CopyNumber | Variation_32962 (DGV) |
| 7 | 143,545,719 | 143,874,190 | CopyNumber | Variation_53583 (DGV) |
| 7 | 143,572,286 | 143,866,532 | CopyNumber | Variation_8581 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.