OR2A4 Olfactory Receptor
| Gene Symbol | OR2A41 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | A |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR6-37, WUGSC:H_DJ0988G15.2, HsOR6.4.1, ORL732 |
| External Ids | HGNC: 14729 GeneBank: BK004444, NM_030908 ORDB: ORL732 |
| Build #39 labels | OR2A10, OR2A4 |
| Chromosomal location | 6:131,700,472-131,701,401 (-) |
| Cluster | 6@132 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2A7 | 99.03% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2A7 | 84% | 310 |
| Mouse | Or2a7 | 81% | 310 |
| Rat | Or2a25 | 76% | 307 |
| Cow | OR2A7 | 78% | 307 |
| Orang | OR2A7P | 92% | 310 |
| Horse | OR2A7 | 83% | 310 |
| Horse | OR2A25 | 81% | 308 |
| Chimp | OR2A25 | 80% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | H62445 |
| mRNA | BC120954 |
| GNF Atlas2 | 219912_s_at |
Sequence information
| Nucleotide sequence |
ATGGGAGACAATATAACATCCATCAGAGAGTTCCTCCTACTGGGATTTCCCGTTGGCCCA AGGATTCAGATGCTCCTCTTTGGGCTCTTCTCCCTGTTCTACGTCTTCACCCTGCTGGGG AACGGGACCATACTGGGGCTCATCTCACTGGACTCCAGACTGCACGCCCCCATGTACTTC TTCCTCTCACACCTGGCGGTCGTCGACATCGCCTACGCCTGCAACACGGTGCCCCGGATG CTGGTGAACCTCCTGCATCCAGCCAAGCCCATCTCCTTTGCGGGCCGCATGATGCAGACC TTTCTGTTTTCCACTTTTGCTGTCACAGAATGTCTCCTCCTGGTGGTGATGTCCTATGAT CTGTACGTGGCCATCTGCCACCCCCTCCGATATTTGGCCATCATGACCTGGAGAGTCTGC ATCACCCTCGCGGTGACTTCCTGGACCACTGGAGTCCTTTTATCCTTGATTCATCTTGTG TTACTTCTACCTTTACCCTTCTGTAGGCCCCAGAAAATTTATCACTTTTTTTGTGAAATC TTGGCTGTTCTCAAACTTGCCTGTGCAGATACCCACATCAATGAGAACATGGTCTTGGCC GGAGCAATTTCTGGGCTGGTGGGACCCTTGTCCACAATTGTAGTTTCATATATGTGCATC CTCTGTGCTATCCTTCAGATCCAATCAAGGGAAGTTCAGAGGAAAGCCTTCCGCACCTGC TTCTCCCACCTCTGTGTGATTGGACTCGTTTATGGCACAGCCATTATCATGTATGTTGGA CCCAGATATGGGAACCCCAAGGAGCAGAAGAAATATCTCCTGCTGTTTCACAGCCTCTTT AATCCCATGCTCAATCCCCTTATCTGTAGTCTTAGGAACTCAGAAGTGAAGAATACTTTG AAGAGAGTGCTGGGAGTAGAAAGGGCTTTA |
| Conceptual translation |
MGDNITSIREFLLLGFPVGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHAPMYF FLSHLAVVDIAYACNTVPRMLVNLLHPAKPISFAGRMMQTFLFSTFAVTECLLLVVMSYD LYVAICHPLRYLAIMTWRVCITLAVTSWTTGVLLSLIHLVLLLPLPFCRPQKIYHFFCEI LAVLKLACADTHINENMVLAGAISGLVGPLSTIVVSYMCILCAILQIQSREVQRKAFRTC FSHLCVIGLVYGTAIIMYVGPRYGNPKEQKKYLLLFHSLFNPMLNPLICSLRNSEVKNTL KRVLGVERAL Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 55 (Hasin) | |||
| 6 | 132,006,529 | 132,212,173 | CopyNumber | Variation_32838 (DGV) |
| 6 | 132,018,772 | 132,036,315 | CopyNumber | Variation_69603 (DGV) |
| 6 | 132,019,301 | 132,029,571 | CopyNumber | Variation_69604 (DGV) |
| 6 | 132,019,359 | 132,028,548 | CopyNumber | Variation_81589 (DGV), Variation_94012 (DGV) |
| 6 | 132,019,359 | 132,036,050 | CopyNumber | Variation_81590 (DGV), Variation_94014 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2A4.aApr07-unspliced | main_exon | 3UTR | chr6 | 131,699,644 | 131,700,472 | - |
| CDS | chr6 | 131,700,472 | 131,701,401 | - | ||