OR2AF1P Olfactory Receptor
Gene Symbol | OR2AF1P1 (View this gene in GeneCards) |
Family | 2 |
Subfamily | AF |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | ORL4072 |
External Ids | HGNC: 14719 GeneBank: NG_002257 ORDB: ORL4072 |
Build #39 labels | OR2AF1P, OR2AF2P |
Chromosomal location | X:131,619,046-131,619,935 (+) |
Cluster | X@131b |
Synteny | CLIC#48 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR13K1P | 51.38% | 325 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR2AF4P | 62% | 303 |
Mouse | Or13ae2 | 47% | 299 |
Rat | Or2b2 | 44% | 299 |
Cow | OR2AF5P | 70% | 302 |
Orang | OR13K1P | 48% | 342 |
Horse | OR2AF6P | 64% | 303 |
Chimp | OR13K1 | 54% | 276 |
Sequence information
Nucleotide sequence |
ATGACTGAACTCATCCTTGTTGGATTTGCCCAACACCCTGAAATCCAGACTGCCTTCTTC TTGGAACTACTGTTTTTCTACTAGTCACAGCGTTTGAGAACATCCTTATCGTTGCTGTAG TGAGATGAGATTCTCGACTTCATACTCCTATGGGATTTTTTTTTCCTCAGTACCTTATCC TCCCTTGAAATGTGTTACTCCATCAGCTGGGAGCTATAAGTCTTGGCTCAATGCATCAAG GACTTCCCCACCATCTCCTATAACAGCTGTTCTGTTCAGATGATCACACACCTCTTTCTG GGGATGACAGTGTCTCCTCCTTGCTGGCATGGCTTACAACAGGTTTGTTGAAATCTCTTA TCTCCTCCATTACACTATTATTATGAGCAATCGGGTCTGTATACAGTTGGCCTTGGGAAT CTGGACCCATGCCTTCTTAGTAGCAGTCACACTAATCATTGCAATTCCTGCTAGTTATTA TGGACACAATGTCATCAACCATTTTACCTTGAGATCCAGGCCCTGCTGAAGCTCGTCTGC TCAGACACCCTTGTCAGCCTGATTCAGGGTCTGGTTATCAGTGTGTTCACACTGCCCCTG CCCTTCACATTCATCCTCATCTCCTAATTTTGCATTTTTGTTGTGCTGTGGAGGCTAGGC GTGAAGCTTTCTCCACCTGTGGATCTCATCTGACTGGAGTCACCATATTTTATGGGGCAG CCATCTGCATGTACTTGAAACCTCAGTCAAAGGGAACCCAGGAAGAGGATAAAGTTGTCT CAAAACTTTATGGAGCAGTTACTCCCATGTTAAATCCCCCAATTTACATTCAGAGAAATA AGGATATAAAAGGTGCACTTAGAAAGTTAGCCAAAGGAAATGAAAAATCC |
Conceptual translation |
MTELILVGFAQHPEIQTAFFLELLFFY/VTAFENILIVAVVRXSRLHTPMGFFF\ST LSSLEMCYSISWELXLAQCIKDFPTISYNSCSVQMITHLFLG/D/CLLLAGMAYNRF VEISYLLHYTIIMSNRVCIQLALGIWTHAFLVAVTLIIAIPASYYGHNVINHFT/EIQA LLKLVCSDTLVSLIQGLVISVFTLPLPFTFILISXCIFV/AVEARREAFSTCGSHLTG VTIFYGAAICMYLKPQSKGTQEEDKVVSKLYGAVTPMLNPPIYIQRNKDIKGALRKLAKG NEKS Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
X | 130,753,156 | 130,753,156 | SNP | A/T | rs5977524 (DbSNP) | |
X | 130,753,416 | 130,753,416 | SNP | A/G | rs10521771 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 149 (Hasin) | |||
X | 130,752,948 | 130,755,937 | Deletion | #324 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.