Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR2AL1P Olfactory Receptor

Gene Symbol OR2AL1P1 (View this gene in GeneCards)
Family 2
Subfamily AL
Pseudogene Yes
CORP pseudogene probability score
Aliases ORL3480
External Ids HGNC: 14712   GeneBank: NG_002273   ORDB: ORL3480   
Build #39 labels OR2AL1P
Chromosomal location 11:105,194,090-105,194,936 (-)
Cluster 11@105
Synteny CLIC#0
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR2J3 51.25% 240
OR2J4P 47.01% 251

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Mouse Or2j3 44% 252
Rat Or2j3 44% 252
Cow OR2J3 48% 241
Orang OR2J1 46% 254
Horse OR2J3 50% 242
Chimp OR2J3 51% 241

Sequence information

Nucleotide sequence ATGGGAAATATCAACATAAGTCTTGAAAATTACTTTATTCTACTGGGTCTTTCTAATTGA
CCTCCTCTGGAAATAGTTATTTTTGTAGTTCTCTTGATATTCTGCTTCATGACACTGATA
GGCAAGCTGTTCAGCATCATTCTGTCATACCTGGACTCCCATCCCCACACTCTCGGTACT
TATTCTCTTTTCTGGATTTCTGCTACACCATCAGTTCCATCTTTTAATTACAGTACAATC
TCTGGGGCCCACAGAAGAACATCTCTTATGCCAGTGGTATGATTCAAATTTATTTTGTTC
TCACACTGGGAACCATGGATTGCGCTCTACTGGTGGTGATGTCCAGGACTGTGATGCAGC
TGGACACAGACACTTGCCTTATACTGTTGTTATGGCTGTGGCTTTTTGGGTAAGTAGCTT
TACCAACTCAGCATTTGATTCCTTTTTTACCTTCTGGGTAACCCTGTGTGGACATCACTA
TTATGCTTACATCTTTATATTTACATCATTGTTAGTATAAAGATGGTTCATTAACAGAAA
GAAACAGTCTGTGTTCTCACTGAATCATGCAGCTTTATTAACATTATCTTTTCCATTATA
AAATGACTGCTTCCAGGAGATTGAAAAGAACATGTTAAGAAAAGCACAGCATTGGAGAAT
CTGAAAGCATGTGATCTTGTTCAATTAAACCAAGTATCAAAAACATGCATTTTTATGAGA
CTATTTTAGGAAATTCATCATTTAGAATGAGGTTAAATTATGAGGGGCAAAACAAAAATA
AAAAATAATATTAACTTAAGTAAAATAAAAATTTATTTATCTCCCTCATAAAAAGAATTT
CAAAGAT
Conceptual translation MGNINISLENYFILLGLSNXPLEIVIFVVLLIFCFMTLIGKLFSIILSYLDSHPHT/R
YLFSFLDFCYTISSIFXQYNLWGPQKNISYASGMIQIYFVLTLGTMDCALLVVMS/DC
DAAGHRHLPYTVVMAVAFWVSSFTNSAFDSFFTFWVTLCGHHYYAYIFIFTSLLVXW/
HXKETVCVLTESCSFINIIFSII\DCFQEIEKNMLR/STA/GESESMXCSIKPSI
KNMHFYETILGNSSFRMRLNYEGQNK/XIILTXKXFIYLPHKKNFKD

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 105,065,025 105,065,024 Ins(1) -/G rs34959466 (DbSNP)
11 105,065,425 105,065,425 SNP A/G rs12287622 (DbSNP)
11 105,065,513 105,065,513 SNP A/G rs12293654 (DbSNP)
11 105,065,485 105,065,485 SNP A/G rs57774068 (DbSNP)
11 105,194,520 105,194,520 SNP C/G 1000GP (CHBJPT)
11 100 -100 SNP A/G 1000GP (YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 103,964,790 105,346,058 CopyNumber Variation_8695 (DGV)
11 105,049,805 105,066,898 CopyNumber Variation_38218 (DGV)
11 105,049,306 105,068,980 CopyNumber Variation_86009 (DGV)
CopyNumber 56 (Hasin)
11 105,062,817 105,065,763 Deletion #277 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.