OR2AM1P Olfactory Receptor
Gene Symbol | OR2AM1P1 (View this gene in GeneCards) |
Family | 2 |
Subfamily | AM |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsOR9.1.7P, ORL326 |
External Ids | HGNC: 15113 GeneBank: NG_004255 ORDB: ORL326 |
Build #39 labels | OR2AM1P |
Chromosomal location | 9:36,021,711-36,022,115 (+) |
Cluster | 9@36 |
Synteny | CLIC#17 |
Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR13C6P | 63.76% | 149 |
OR13C7P | 63.76% | 149 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR13C7H | 60% | 156 |
Mouse | Or13c7 | 62% | 154 |
Rat | Or13c7 | 63% | 153 |
Cow | OR13C7 | 62% | 153 |
Orang | OR13C6 | 63% | 150 |
Horse | OR13C7M | 61% | 153 |
Chimp | OR13C7 | 64% | 153 |
Expression evidences
Source | Accession |
---|---|
GNF Atlas2 | gnf1h02241_at |
GNF Atlas2 | gnf1h02242_s_at |
Sequence information
Nucleotide sequence |
GGAGTTCTTGGCCCATCTGCCCTAAGGGAAGGGAAGAGACTAAATGTCATCAGTCACCTG CCCTTCTATGGGGACATCATCAACCACTTGACCTGTGAGGTCCTGGCTGTCCTGAAGTTG GCCTGTGCTGACATCTCTATCAACATGATCAGGCAAAAGGCCTTCTCCACCTGCTCTGCC CACCTCACAGTTGTGGTCATCTTCTACAGGACCATCCTCTTCACGCATGGGAAGCCCAAG TCGAAGGACCCACTGGGGGCAGACAAGCAGGATTTTGCAGACAAACTCATCTCCCTCTCC TATGGAGTGGTCACCCCCATGCTGAACACCATCATCTACAGCCTGAGGAAAAAGGGTGTG AAGGCTGCTGTGAAGAACCTGGTATTTCAGAAACCCCTAACTGAA |
Conceptual translation |
GVLGPSALREGKRLNVISHLPFYGDIINHLTCEVLAVLKLACADISINMIRQKAFSTCSA HLTVVVIFYRTILFTHGKPKSKDPLGADKQDFADKLISLSYGVVTPMLNTIIYSLRKKGV KAAVKNLVFQKPLTE Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
9 | 36,021,852 | 36,021,852 | SNP | A/G | rs10511925 (DbSNP) | |
9 | 36,022,016 | 36,022,016 | SNP | C/G | rs73645976 (DbSNP) | |
9 | 36,022,050 | 36,022,050 | SNP | C/T | rs12685886 (DbSNP) | |
9 | 36,021,855 | 36,021,855 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
9 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
9 | 36,005,884 | 36,453,176 | CopyNumber | Variation_47924 (DGV) |
9 | 36,021,608 | 36,024,112 | CopyNumber | #114 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.