OR2J4P Olfactory Receptor
| Gene Symbol | OR2J4P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | J |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-9, hs6M1-5, OR6-20, dJ80I19.5, HsOR6.3.9P, ORL3167 |
| External Ids | HGNC: 8262 GeneBank: AB065683, BK004756, NG_004684, XM_498072 ORDB: ORL3167 |
| Build #39 labels | OR2J4P |
| Chromosomal location | 6:29,181,510-29,182,442 (+) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2J3 | 89.71% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2B2 | 59% | 303 |
| Mouse | Or2j3 | 77% | 304 |
| Rat | Or2j3 | 78% | 297 |
| Cow | OR2J3 | 85% | 309 |
| Cow | OR2J3C | 85% | 304 |
| Cow | OR2J3D | 85% | 304 |
| Cow | OR2J3B | 84% | 304 |
| Orang | OR2J3 | 84% | 318 |
| Orang | OR2J1 | 85% | 306 |
| Orang | OR2J2 | 81% | 304 |
| Horse | OR2J3 | 87% | 305 |
| Horse | OR2J1 | 86% | 306 |
| Horse | OR2J3G | 85% | 306 |
| Chimp | OR2J3 | 90% | 311 |
Sequence information
| Nucleotide sequence |
ATGAATGATGATGGAAAAGTCAATGCTAGCTCTGAGGGGTACTTTATTTTAGTTGGATTT TCTAATTGGCCTTATCTGGAAGTAGTTCTCTTTGTGGTTATTTTGATCTTCTGCTTGATG ACACTGATAGGAAACCTGTTCATCATCATCCTGACGTACCTGGACTCCCATCTCCATACT CCCTTGTATTTCTTCCTTTCAAATCTCTCATTTCTGGATCTCTGCTACACCACCAGCTCT ATCCCTCAGTTGCTGGTCAGTCTCTGGGGTGTGGAAAAGACCATTTCTTATGCTGGTTGC ATGGTTCAACTTTACTTTTTTCTCACACTGGGAACCACAGAGTGTGTCCTACTGGTGGTG ATGTCCTATGACCGTTATGCAGCTGTGTGTAGACCTTTGCATTACACTGTCCTCATGCAC TCTCGTTTCTGCCACTTGTTGGCTGTGGCTTCTTGGGTAAGTGGTTTTACAAACCCAGCA CTTCATTCCTCCTTCACCTTCTGGGTACCTCTGTGTGGACACCGCCAAATAGATCACTTT TTCTGTGAAGTTCCGGCACTTTTATGATTATCATTTGTCAATACCCGTGAAAATAAACTG ACCCTCATGATCACAAGCTCCATTTTTGTTCTGCTACTTCTCACCCTCATTTTCACTTCC TATGGTGCTATTGCCCAGGCTGTACTGAGGATGCAGTCAACCACTGGGCTTCAGAAAGTA TTTGGAACATGTGGAGCTCATCATATGGTTGTATCTCTCTTTTTCATTCCGGCCATGTGC ATGTATCTCCAGCCACCATCAGGGAATTCTCAAGATCAAGGCAAGTTCATTGCTCTCTTT TATACTGTTGTTACACCTAGTCTTAACCCTCTAATCTACACCCTCAGAAACAAAGATGTA AGAGGGGTAGTGAAGAGACTAAGGGGGTGGGAG |
| Conceptual translation |
MNDDGKVNASSEGYFILVGFSNWPYLEVVLFVVILIFCLMTLIGNLFIIILTYLDSHLHT PLYFFLSNLSFLDLCYTTSSIPQLLVSLWGVEKTISYAGCMVQLYFFLTLGTTECVLLVV MSYDRYAAVCRPLHYTVLMHSRFCHLLAVASWVSGFTNPALHSSFTFWVPLCGHRQIDHF FCEVPALLXSFVNTRENKLTLMITSSIFVLLLLTLIFTSYGAIAQAVLRMQSTTGLQKV FGTCGAHHMVVSLFFIPAMCMYLQPPSGNSQDQGKFIALFYTVVTPSLNPLIYTLRNKDV RGVVKRLRGWE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,150,080 | 29,150,079 | Ins(1) | -/G | rs35274516 (DbSNP) | |
| 6 | 29,149,442 | 29,149,442 | SNP | A/G | rs3116816 (DbSNP) | |
| 6 | 29,149,561 | 29,149,561 | SNP | A/G | rs3116817 (DbSNP) | |
| 6 | 29,149,511 | 29,149,511 | SNP | C/G | rs9501302 (DbSNP) | |
| 6 | 29,149,645 | 29,149,645 | SNP | C/T | rs3116819 (DbSNP) | |
| 6 | 29,149,606 | 29,149,606 | SNP | C/T | rs9918458 (DbSNP) | |
| 6 | 29,149,605 | 29,149,605 | SNP | G/T | rs3116818 (DbSNP) | |
| 6 | 29,149,632 | 29,149,632 | SNP | G/T | rs3129168 (DbSNP) | |
| 6 | 29,181,665 | 29,181,665 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 6 | 29,181,784 | 29,181,784 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 29,181,828 | 29,181,828 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 6 | 29,181,855 | 29,181,855 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 6 | 29,181,868 | 29,181,868 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 29,182,104 | 29,182,104 | SNP | A/G | 1000GP (CHBJPT) | |
| 6 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 29,099,579 | 29,149,561 | CopyNumber | Variation_51868 (DGV) |
| 6 | 29,091,539 | 29,163,849 | CopyNumber | Variation_64459 (DGV) |
| 6 | 29,149,187 | 29,152,219 | Deletion, CopyNumber | #280 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.