OR2T34 Olfactory Receptor
| Gene Symbol | OR2T341 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 0.12 (functional) |
| Aliases | OR1-63, HsOR1.5.45 |
| External Ids | HGNC: 31256 GeneBank: AB065645, AF399612, BK004477, NM_001001821 |
| Build #39 labels | |
| Chromosomal location | 1:248,573,804-248,574,757 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2T3 | 98.11% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2T4D | 68% | 302 |
| Mouse | Or2t29 | 65% | 310 |
| Rat | Or2t29 | 63% | 310 |
| Cow | OR2T3 | 81% | 318 |
| Orang | OR2T3 | 96% | 318 |
| Horse | OR2T79 | 67% | 304 |
| Chimp | OR2T3BP | 95% | 321 |
| Chimp | OR2T3P | 96% | 318 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136926 |
Sequence information
| Nucleotide sequence |
ATGTGCTCAGGGAATCAGACTTCTCAGAATCAAACAGCAAGCACTGATTTCACCCTCACG GGACTCTTTGCTGAGAGCAAGCATGCTGCCCTCCTCTACACCGTGACCTTCCTTCTTTTC TTGATGGCCCTCACTGGGAATGCCCTCCTCATCCTCCTCATCCACTCAGAGCCCCGCCTC CACACCCCCATGTACTTCTTCATCAGCCAGCTCGCGCTCATGGATCTCATGTACCTATGC GTGACTGTGCCCAAGATGCTTGTGGGCCAGGTCACTGGAGATGATACCATTTCCCCGTCA GGCTGTGGGATCCAGATGTTCTTCCACCTGACCCTGGCTGGAGCTGAGGTTTTCCTCCTG GCTGCCATGGCCTATGACCGATATGCTGCTGTTTGCAGACCTCTCCATTACCCACTGCTG ATGAACCAGAGGGTGTGCCAGCTCCTGGTGTCAGCCTGCTGGGTTTTGGGAATGGTTGAT GGTTTGTTGCTCACCCCCATTACCATGAGCTTCCCCTTTTGCCAGTCTAGGAAAATCCTG AGTTTTTTCTGTGAGACTCCTGCCCTGCTGAAGCTCTCCTGCTCTGACGTCTCCCTCTAT AAGATGCTCACGTACCTGTGCTGCATCCTCATGCTTCTCACCCCCATCATGGTCATCTCC AGCTCATACACCCTCATCCTGCATCTCATCCACAGGATGAATTCTGCCGCCGGCCGCAGG AAGGCCTTGGCCACCTGCTCCTCCCACATGATCATAGTGCTGCTGCTCTTCGGTGCTTCC TTCTACACCTACATGCTCCGGAGTTCCTACCACACAGCTGAGCAGGACATGATGGTGTCT GCCTTTTACACCATCTTCACTCCTGTGCTGAACCCCCTCATTTACAGTCTCCGCAACAAA GATGTCACCAGGGCTCTGAGGAGCATGATGCAGTCAAGAATGAACCAAGAAAAG |
| Conceptual translation |
MCSGNQTSQNQTASTDFTLTGLFAESKHAALLYTVTFLLFLMALTGNALLILLIHSEPRL HTPMYFFISQLALMDLMYLCVTVPKMLVGQVTGDDTISPSGCGIQMFFHLTLAGAEVFLL AAMAYDRYAAVCRPLHYPLLMNQRVCQLLVSACWVLGMVDGLLLTPITMSFPFCQSRKIL SFFCETPALLKLSCSDVSLYKMLTYLCCILMLLTPIMVISSSYTLILHLIHRMNSAAGRR KALATCSSHMIIVLLLFGASFYTYMLRSSYHTAEQDMMVSAFYTIFTPVLNPLIYSLRNK DVTRALRSMMQSRMNQEK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,737,343 | 248,737,343 | NS | C/T | R/H | rs61833441 (DbSNP) |
| 1 | 248,737,348 | 248,737,348 | SYN | A/G | A/A | rs61833442 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 248,687,510 | 248,865,377 | CopyNumber | Variation_0017 (DGV) |
| 1 | 248,644,944 | 248,790,408 | CopyNumber | Variation_0263 (DGV) |
| 1 | 248,701,948 | 248,877,423 | CopyNumber | Variation_2056 (DGV) |
| 1 | 248,595,681 | 248,817,382 | CopyNumber | Variation_2359 (DGV) |
| 1 | 248,500,109 | 248,865,374 | CopyNumber | Variation_3340 (DGV) |
| 1 | 248,727,928 | 248,796,682 | CopyNumber | Variation_6818 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,522,680 | 249,158,239 | CopyNumber | Variation_8355 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 248,626,918 | 248,830,541 | Inversion | Variation_37092 (DGV) |
| 1 | 248,727,899 | 248,808,428 | CopyNumber | Variation_38963 (DGV) |
| 1 | 248,738,015 | 248,795,518 | CopyNumber | Variation_66540 (DGV) |
| 1 | 248,729,106 | 248,795,518 | CopyNumber | Variation_66541 (DGV) |
| 1 | 248,732,055 | 248,795,305 | CopyNumber | Variation_74999 (DGV) |
| 1 | 248,703,193 | 248,795,305 | CopyNumber | Variation_75000 (DGV) |
| CopyNumber | 63 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| M202T | % Freq | CORP | |
|---|---|---|---|
| 1 | M | 92.24 | 0.074 |
| 2 | T | 7.76 | 0.074 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2T34.aApr07-unspliced | main_exon | 3UTR | chr1 | 248,573,801 | 248,573,804 | - |
| CDS | chr1 | 248,573,804 | 248,574,757 | - | ||