Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR2X1P Olfactory Receptor

Gene Symbol OR2X1P1 (View this gene in GeneCards)
Family 2
Subfamily X
Pseudogene Yes
CORP pseudogene probability score
Aliases
External Ids HGNC: 31258   GeneBank: NG_004412   
Build #39 labels OR2X1P
Chromosomal location 1:247,938,889-247,939,633 (+)
Cluster 1@248
Synteny CLIC#5
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR2AJ1 55.88% 136

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR2AJ7 51% 128
Mouse Or2aj4 52% 130
Rat Or2aj4-ps 51% 130
Cow OR2AJ10P 54% 126
Orang OR2AJ1 54% 130
Horse OR2AJ15 53% 134
Chimp OR2X2P 90% 122

Sequence information

Nucleotide sequence TACCTGGGTATTGTGGTGGAGATACACATAGTCTTTTGAACATTCCGTTGTAGGTCGCTG
GTAGCTGGATATGTCCTTTAAACTTTTGTGGCAATTCATTTGAGAAGAAACGCAGCTTTT
TCTATTGAGTTCTTATGCTATAAGTAAAGGATGCAAGACATTAATTAGACAAAATAAGGT
AAAATTTTGTATTCGCTTAGAGAGTTTAAGAGGCTATTAGCCACTAGTCTCTATAGTGCC
TAAGTAAATCGATTCTGCTTAATAAACTGCTACCTGGCTTAGTAAGTAAACAAATTGAAA
CTTATTTTAGGAAAGAAATATATATTCTTATATCTACATCAGATTCTCTTATGTAGAAAC
ACTAGAGGGTGAATGAGGAGTTAATGTAAGCAGCATCATATTTTTGCTCATTCCTTTCTC
TATGATTTCTGCTTCTTCTGTCCAAATTCTGTGAGGTGTCCTCTAGATGAAATTATCACA
GGCATGGAAAAGGTCATTTTCCACTTGGTCCATCCTCATGATTGCAGTTGTAACATACTG
GGACTCATTCATTTTCACATATGTATATGAGACTTAAATCATCCACATTTCAGGCCAGGT
TAAGTTTCTAGAAATATTCTATGCTTTCCTTGCACTTACACTCAATCCTGTCGTCTACAG
CGTTGGCACTGACAGTGTTCTGGTGGCAATGAAAAATATGCTCTAGAGCAACATTCTACA
TAAAAAAAAGAATAGGAAAATTCCT
Conceptual translation YLGIVVEIHIVFXFRCRSLVAGYVLXFVAIHLRRNAAFSIEFLCYKXMQDINXKX
KILYSLREFKRLLATSLYSAXNRF\XTATWLSKXNXLFXRNIYSYIYIRFSYVE
TLEGEXVNVSSIIFLLIPFSMISASSVQILXVLXKLSQAWKRSFSTWSILMIAVVTY
WDSFIFTYVYETXIHISGQVKFLEIFYAFLALTLNPVVYSVGTDSVLVAMKNMLXNIL
HKKKNRKIP

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
1 100 -100 SNP A/G 1000GP (YRI, YRI)
1 247,939,250 247,939,250 SNP C/T 1000GP (CEU, CHBJPT)
1 247,939,550 247,939,550 SNP G/A 1000GP (CEU)
1 248,102,552 248,102,552 SNP T/C rs1538198 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
1 247,074,430 248,328,835 CopyNumber Variation_6816 (DGV)
1 247,714,585 248,277,146 CopyNumber Variation_3339 (DGV)
1 247,753,207 248,376,070 CopyNumber Variation_8353 (DGV)
1 247,753,334 248,322,316 CopyNumber Variation_2358 (DGV)
1 247,849,473 248,277,638 CopyNumber Variation_48302 (DGV)
1 247,849,473 248,285,441 CopyNumber Variation_48303 (DGV)
1 248,060,959 249,167,690 CopyNumber Variation_8354 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.