Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A12P Olfactory Receptor

Gene Symbol OR4A12P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-116, HsOR11.11.2P, ORL3592
External Ids HGNC: 15149   GeneBank: BK004553, NG_004243   ORDB: ORL3592   
Build #39 labels OR4A12P
Chromosomal location 11:55,325,756-55,326,700 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A13P 75.65% 308
OR4A1P 76.47% 306
OR4A7P 77.15% 302

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A39 70% 308
Mouse Or4a39 71% 312
Rat Or4a77e 67% 312
Cow OR4A2 64% 303
Orang OR4A47P 63% 294
Horse OR4A124 71% 311
Chimp OR4A13 76% 315

Sequence information

Nucleotide sequence ATGGGACTGAGTAACAATGTTACAGAACTTTTCCTCCTGGGCCTCACTCAGGATCTCGAT
GTGCAAAATGCATTATTTGTCATGTTTTTACTAACATACATTGTGACTATGGTGGGGAAC
CTGCTCATTGTGGTGACTATTATTGCCACCCCATCCTTGGGCTCCCCAATGTACTTTTTC
CTTGCCTGCCTGTCATTTATAGATGCTGTGTATTCCACCACCATTTATCCCAAATTGGTT
GTAGACTAACTCCATAATTAAAAGACTATTTTGTTCCCAACTTGCATGGGCCAGCCACTT
ACAGACCACTTATTTGGTGGTGTTGAGGTCTTTTTTTCTGTTGGTGATGGCCTGTGATCG
CTATGTGGCCATCTGTAAGCCACTGCACTATTTTACCATCATGAATCGACAGGTTTTCAT
CCTTCTGTTGGTAGTGGCTGTGACTGGAGTTTTGTGCGTTCTGTGTTCCAAATTGTTGTT
GTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTAACATGTAC
CCATTAATGGAAATGGCATGAACTGACACCTACTTTATAGGCCTCACTGTGGTTTTCAAG
GTTGAAGCAATCTGTGTGGTCATCTTCACCCTTCTACTAATCTCCTCTGGCGTCATCCTA
ATCTCCCTTAAAACTTACAGTCAGGAAGGGAGGCATAAAGCCCTGTTTACCTGCAGCTCC
CGCATTACTGTAGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTT
TTTAACTTCCCCATTGATAAATTTATTATTGTGTTTTATACAGTTATCACACCCATGCTG
AATCCTTTAATATACATGTTGAGAAATTCATAGACGAGAAATGCTATAGAAAACCCCTAG
TGTAAAAAATTAACTGTAGATAGAATAAGAGTGTACATCTTCATG
Conceptual translation MGLSNNVTELFLLGLTQDLDVQNALFVMFLLTYIVTMVGNLLIVVTIIATPSLGSPMYFF
LACLSFIDAVYSTTIYPKLVVDXHNXTILFPTCMGQPLTDHLFGGVEVFF\LVMACD
RYVAICKPLHYFTIMNRQVFILLLVVAVTG/FVRSVFQIVVVYSLPFCGPNVIDHFFCN
MYPLMEMAXDTYFIGLTVVFKVEAICVVIFTLLLISSGVILISLKTYSQEGRHKALFTC
SSRITVVVLFFVPCIFMYVRPVFNFPIDKFIIVFYTVITPMLNPLIYMLRNSXRNAIEN
PXKKLTVDRIRVYIFM

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,094,021 55,094,020 Ins(1) -/C rs34579429 (DbSNP)
11 55,093,248 55,093,248 SNP A/G rs61918393 (DbSNP)
11 55,093,883 55,093,883 SNP A/G rs12287562 (DbSNP)
11 55,093,331 55,093,331 SNP A/T rs72480337 (DbSNP)
11 55,093,735 55,093,735 SNP C/T rs1834309 (DbSNP)
11 55,093,600 55,093,600 SNP C/T rs9943648 (DbSNP)
11 55,093,736 55,093,736 SNP C/T rs1834310 (DbSNP)
11 55,093,625 55,093,625 SNP G/T rs1364767 (DbSNP)
11 55,325,772 55,325,772 SNP A/G 1000GP (CEU)
11 55,325,826 55,325,826 SNP C/T 1000GP (CEU)
11 55,326,149 55,326,149 SNP T/G 1000GP (CEU, CHBJPT)
11 100 -100 SNP T/G 1000GP (YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,083,434 55,156,434 CopyNumber Variation_48825 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.