Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A3P Olfactory Receptor

Gene Symbol OR4A3P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases ORL3572
External Ids HGNC: 15160   GeneBank: NG_004237   ORDB: ORL3572   
Build #39 labels OR4A3P
Chromosomal location 11:54,662,580-54,663,450 (-)
Cluster 11@51
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A48P 67.91% 215

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A47 56% 126
Mouse Or4a47 54% 114
Rat Or4a47 56% 114
Cow OR4A47D 55% 121
Orang OR4A47P 56% 117
Horse OR4A140P 45% 170
Chimp OR4AL2P 88% 120

Sequence information

Nucleotide sequence TTTAAGCTATCATCTTTTTTCAAAACACCTTGTGCGTGCCTCCTGGCAGTTGGTGAACTT
TCTGATGTATTCAACAGCATTGATCTCCACTTTGTCTCTGCATGTTCTCCTTTTATTTTA
ATTTTTACCATTTTTTTTCCCACATGAAAGGTCTTGCAGTCACTTAGAAATGCTGAGATA
AATTGACTGGTATAAAGTAAGGTATCTGATTAATGAAATTTACTCTAAAACTAATTGGCC
TTTTCATGGACTATAAGACTATGCACAACCACTTCGTACTCAAACATGCAATTCTCTTTC
CAATGTTGTATGACCCAGTACCCAGCTCTTCAAAGCACATTTTTTTTTCTTGGTAGATCT
CAGGTCTTCCTTCTGTTGCTGATGGCCTAGACAACTATAGGGCCATCTGAAAGTCCTTGC
AGTATTTGGTTGTCATGAAGCAATGGCTGTGTGTTGTGCTGCTGGTGGTGCCCTGGGCTG
GAGGATTTTTGCACACAGTAATTCAACTTGGCCTTATTCATGGGCTCCCATCTTATGACC
CCAATGTCATTGGTCGTTTTGTCTGTGACATGGACCCCTTAATGAAGCTTGTCTGTGACT
ATACACTCAACAGATTTGTCTATTTTGCAGGTCATGACTTAAATACTAGGTTTTATATAT
TTCGTTTATATTCAGACTGGACTGTTTCCTTTTGGTGATTTGACTTTGGTATCCTTTTGT
AATTTTTTCCCTAGAGGACATGATTCTATAAATCTTGTTATACATAGTTATTATCCCTGT
GGCATCTCCGGAGATACAGAGCCTACCCTCAGAATTATGATAAAGGTCCCAATGAATTTA
ATTAGAGAAGAATCACCTTTGGAGATGCACC
Conceptual translation FKLSSFFKTPCACLLAVGELSDVFNSIDLXLCLCMFSFYFNFYHFFSHMKGLAVTXCXbr/>DKLTGIKXIXM\LLXXAFSWTIRLCTTTSYSNMQFSFQCCMTQYPALQSTFFFLG
RSQVFLLLLMA/DNYRAIXSLQYLVVMKQWLCVVLLVVPWAGGFLHTVIQLGLIHGLP
SYDPNVIGRFVCDMDPLMKLVCDYTLNRFVYFAGHDL/YXLYISFIFRLDCFLLVIX
WYPFVIFSLE\XYKSCYTXLSL/ASPEIQSLPSELXRSQXXEKNHLWRCT

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 SNP G/T 1000GP (YRI, YRI, YRI)
11 51,455,848 51,455,848 SNP C/T rs547549 (DbSNP)
11 51,455,901 51,455,901 SNP C/G rs4486609 (DbSNP)
11 51,456,144 51,456,144 SNP C/G rs12574159 (DbSNP)
11 51,456,498 51,456,498 SNP A/C rs61891433 (DbSNP)
11 51,456,502 51,456,502 SNP A/T rs61891434 (DbSNP)
11 51,456,554 51,456,554 SNP T/C rs496572 (DbSNP)
11 54,662,725 54,662,725 SNP C/T 1000GP (CEU, CHBJPT)
11 54,662,781 54,662,781 SNP C/A 1000GP (CEU)
11 54,663,065 54,663,065 SNP A/T 1000GP (CEU)

Variations - CNVs

Chr Start End Type Sources
11 51,192,824 51,563,636 CopyNumber Variation_8689 (DGV)
11 51,228,146 51,525,878 CopyNumber Variation_48823 (DGV)
11 51,372,036 51,529,002 CopyNumber Variation_53111 (DGV)
11 51,453,829 51,456,799 Deletion #216 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.