OR4A48P Olfactory Receptor
| Gene Symbol | OR4A48P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.14P |
| External Ids | HGNC: 31267 GeneBank: NG_004418 |
| Build #39 labels | |
| Chromosomal location | 11:48,491,721-48,492,494 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A18P | 76.23% | 223 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A47 | 63% | 104 |
| Mouse | Or4c1 | 43% | 145 |
| Rat | Or4c1 | 42% | 143 |
| Cow | OR4A47WP | 56% | 108 |
| Horse | OR4A140P | 52% | 141 |
| Chimp | OR4AL1P | 96% | 110 |
Sequence information
| Nucleotide sequence |
CTTTTTTCAAAACACCTTGTGCGTGCCTCCTGGCAGTTGGTGAACTTTCTGATGTATTCA ACAGCATTGATCTCCACTTTGTCTCTGCATGTTCTCCTTTTATTTTAATTTTTACCATTT TTTTCCCACATAAAAGGTCTTGCAGTCACTTAGAAATGCTGAGATAAATTGACTGGTATA AAGTAAGGTATATGATTAACGAAATTTACACTAAAGCTAATTGGCCTTTTCATGGACTAT AAGACTATGCACAACCACTCCGTACTCAAACATGCATTTCTCTCTCAAATGTTGTATGAC CCAGTACCCAGCTCTTCACAGCACACTTTTTTCTTGGTGGATCTCAGGTGTTCCTTCTGT TGGTGATGGCCTAGACCACTTATAGGGCCATCTGAAAGTCCTTGCAGTATTTGGTTGTCA TGAAGCAATGGCTGTGTGTTGTGCTGCTGGTTGTGCTCTGGGCTGGAGGATTTTTGCACA CAGTAATACAACTTGACCTTATTCATGGGCTCCCATCTTATGACCCCAATGTCATTGGTC ATTTTGTCTGTAACATGGACCCCTTAATGAAGCTTGTCTGTGACTATACACTCAACAGAT TTGCCTATTTTGCAGGTCATGATTTAAATACTAGGTTTTATATATTTCATTTACATTCAG ACTGGACTGTTTCCTTTTGGTGATTTGACTTTGTTATTCTTTTGTAATTTTTTCCCTAGA GGACATGGTTCTATAAATCTTGTTATACATAGTTATTATCCCTGTGGCGTCTCT |
| Conceptual translation |
LFSKHLVRASWQLVNFLMYSTALISTLSLHVL\YFNFYHFFPTXVLQSLRNAEINXV XKVYDXNLHXXAFSWTIRL\QPLRTQTCISLSNVVXSTQLFTAHFFLGGSQVFL LLVMAXTYRAIXSLQYLVVMKQWLCVVLLVVLWAGGFLHTVIQLDLIHGLPSYDPNVI GHFVCNMDPLMKLVCDYTLNRFAYFAGHDLNT/VLYISFTFRLDCFLLVIXCYSFVIF SLE/HGSINLVIHSYYPCGVS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI) | |
| 11 | 48,491,721 | 48,491,721 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 48,492,255 | 48,492,255 | SNP | T/C | 1000GP (CEU) | |
| 11 | 48,492,340 | 48,492,340 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,492,379 | 48,492,379 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,492,407 | 48,492,407 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,513,294 | 48,513,294 | SNP | C/T | rs11823603 (DbSNP) | |
| 11 | 48,513,769 | 48,513,769 | SNP | C/A | rs72482367 (DbSNP) | |
| 11 | 48,513,892 | 48,513,892 | SNP | A/T | rs11039772 (DbSNP) | |
| 11 | 48,513,931 | 48,513,931 | SNP | A/G | rs11039773 (DbSNP) | |
| 11 | 48,513,959 | 48,513,959 | SNP | C/G | rs11039774 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 35 (Hasin) | |||
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,513,173 | 48,516,046 | Deletion | #206 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.