OR4A7P Olfactory Receptor
Gene Symbol | OR4A7P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | A |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-109, HsOR11.10.3P, ORL3585 |
External Ids | HGNC: 15164 GeneBank: BK004701, NG_004236 ORDB: ORL3585 |
Build #39 labels | OR4A7P |
Chromosomal location | 11:54,692,450-54,693,359 (-) |
Cluster | 11@51 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4A43P | 91.75% | 303 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4A39 | 72% | 299 |
Mouse | Or4a39 | 73% | 302 |
Rat | Or4a77e | 70% | 302 |
Cow | OR4A2 | 67% | 300 |
Orang | OR4A47P | 63% | 302 |
Horse | OR4A124 | 74% | 300 |
Chimp | OR4A43P | 89% | 303 |
Sequence information
Nucleotide sequence |
ATGAGACTGAGTAGCGATGTTACAGCATTTGTCCTCCTAGGCCTTACTCAGGATCCTGAT GTGTAAAATGCATTATTTGTCGTACATTTACTCACATACATTATGACTATGGTGGGGAAC CTGCCCATTGTGGTGACTATTATTGCCACCCCCACCTTAGGCTCCCCAGTGTACTTCTTC ATTGTCTGCTTGTCATTTATAGATGTTGTGTATTCCACCACCATTCCTCCCAAATTGATT GTAAGCTATCTCCATGATAAAAAGACTATTTCCTTCCGAGCTTGCATGGGTCAGCCCTTT TATAGACCACTTAGTTGGTGGTGCTGAGGCCTTCATTCTGTTGGTGATGGCCTATAATCG CTATGTAGCCATCTGTAAGCCACTGCACTATTTCACCATCATGAATTGACAGGTTTGCAT CCTTCTGTTGGTGGTGGCTGTCACTGCGGGTTTTGTGCATTCTGTGTTTCAAATTTTAGT TGCGTACAGTCTCCTTTTCTGTGGTCCCAATATCATTGACCACTTTTTCTGTGACATGTA CCCATTATTGGAACTGGCACACACTGACACCTACTTTATAGGCCTCACTGTTGTTGCCAA TGGTGGAGGAATCTGTATGGTCTTGTTCATCCTTCTACTAATCTCCTGTGGGGTCATCCT AATCTCCCTTAAAACTTATAGTCAGGAAGGGAGGCATAAAGCCCTGTCTACCTGCAGCTC CCACATTACCGTGGTTGTCCTGTTTTTTGTTCCCTGTATTTTCCTGTATGTTAGACCTGT TTCAAACTTTCCTATTAATAAATTCATTACTGTGTTTTATACAGTTATCACACCCATGTT GAATCCATTAATATACACATTGAGAAACTGAGAGATGAAAAATGCTATAGGAAACCTCTG GTGTAAATAT |
Conceptual translation |
MRLSSDVTAFVLLGLTQDPDVXALFVVHLLTYIMTMVGNLPIVVTIIATPTLGSPVYFF IVCLSFIDVVYSTTIPPKLIVSYLHDKKTISFRACMGQPF\DHLVGGAEAFILLVMAYN RYVAICKPLHYFTIMNXVCILLLVVAVTAGFVHSVFQILVAYSLLFCGPNIIDHFFCDM YPLLELAHTDTYFIGLTVVANGGGICMVLFILLLISCGVILISLKTYSQEGRHKALSTCS SHITVVVLFFVPCIFLYVRPVSNFPINKFITVFYTVITPMLNPLIYTLRNXMKNAIGNL WCKY Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | SNP | A/T | 1000GP (YRI, YRI, YRI, YRI) | |
11 | 51,411,978 | 51,411,978 | large insertion | 14018bp insertion | rs72488333 (DbSNP) | |
11 | 51,411,984 | 51,411,984 | large insertion | 14012bp insertion | rs72488332 (DbSNP) | |
11 | 51,411,989 | 51,411,989 | large insertion | 14007bp insertion | rs72488331 (DbSNP) | |
11 | 51,425,933 | 51,425,933 | SNP | A/T | rs17156300 (DbSNP) | |
11 | 51,425,975 | 51,425,975 | SNP | C/T | rs484052 (DbSNP) | |
11 | 51,426,023 | 51,426,023 | SNP | A/T | rs72486117 (DbSNP) | |
11 | 51,426,066 | 51,426,066 | SNP | G/T | rs5012446 (DbSNP) | |
11 | 51,426,071 | 51,426,071 | SNP | A/C | rs5012447 (DbSNP) | |
11 | 51,426,095 | 51,426,095 | SNP | A/G | rs5012448 (DbSNP) | |
11 | 51,426,096 | 51,426,096 | SNP | C/T | rs5012449 (DbSNP) | |
11 | 51,426,182 | 51,426,182 | SNP | C/T | rs5000498 (DbSNP) | |
11 | 51,426,207 | 51,426,207 | SNP | A/C | rs5000499 (DbSNP) | |
11 | 51,426,238 | 51,426,238 | SNP | A/C | rs5000500 (DbSNP) | |
11 | 51,426,239 | 51,426,239 | SNP | A/T | rs5000501 (DbSNP) | |
11 | 51,426,461 | 51,426,461 | SNP | A/G | rs561121 (DbSNP) | |
11 | 51,426,513 | 51,426,513 | SNP | C/T | rs510697 (DbSNP) | |
11 | 51,426,572 | 51,426,572 | SNP | A/C | rs11246555 (DbSNP) | |
11 | 51,426,624 | 51,426,624 | SNP | A/G | rs61891390 (DbSNP) | |
11 | 51,426,645 | 51,426,645 | SNP | A/G | rs17569863 (DbSNP) | |
11 | 51,426,661 | 51,426,661 | SNP | C/T | rs61891391 (DbSNP) | |
11 | 54,692,601 | 54,692,601 | SNP | G/T | 1000GP (CEU) | |
11 | 54,692,618 | 54,692,618 | SNP | C/T | 1000GP (CEU) | |
11 | 54,692,634 | 54,692,634 | SNP | A/G | 1000GP (CEU) | |
11 | 54,692,707 | 54,692,707 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
11 | 54,692,766 | 54,692,766 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 54,693,046 | 54,693,046 | SNP | G/A | 1000GP (CEU) | |
11 | 54,693,072 | 54,693,072 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
11 | 54,693,256 | 54,693,256 | SNP | A/T | 1000GP (CEU, CHBJPT) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
11 | 51,423,920 | 51,426,929 | Deletion | #273 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.