OR4C11 Olfactory Receptor
Gene Symbol | OR4C111 (View this gene in GeneCards) |
Family | 4 |
Subfamily | C |
Pseudogene | No |
CORP pseudogene probability score | 0.12 (functional) |
Aliases | OR11-136, HsOR11.11.17 |
External Ids | HGNC: 15167 GeneBank: AB065774, BK004503, NM_001004700 |
Build #39 labels | OR4C11P |
Chromosomal location | 11:55,603,444-55,604,373 (-) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4C16 | 67.31% | 309 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4C11E | 92% | 309 |
Dog | OR4C11I | 91% | 309 |
Mouse | Or4c11 | 89% | 307 |
Rat | Or4c11 | 90% | 307 |
Cow | OR4C156P | 76% | 309 |
Orang | OR4C9P | 56% | 309 |
Horse | OR4C11E | 83% | 309 |
Chimp | OR4C31 | 75% | 304 |
Expression evidences
Source | Accession |
---|---|
mRNA | BC140727 |
GNF Atlas2 | gnf1h10928_at |
Sequence information
Nucleotide sequence |
ATGCAGCAAAATAACAGTGTGCCTGAATTCATACTGTTAGGATTAACACAGGATCCCTTG AGGCAGAAAATAGTGTTTGTAATCTTCTTAATTTTCTATATGGGAACTGTGGTGGGGAAT ATGCTCATTATTGTGACCATCAAGTCCAGCCGGACACTAGGAAGCCCCATGTACTTCTTT CTATTTTATTTGTCCTTTGCAGATTCTTGCTTTTCAACTTCCACAGCCCCTAGATTAATT GTGGATGCTCTCTCTGAAAAGAAAATTATAACCTACAATGAGTGCATGACACAAGTCTTT GCACTACATTTATTTGGCTGCATGGAGATCTTTGTCCTCATTCTCATGGCTGTTGATCGC TATGTGGCCATCTGTAAGCCCTTGCGTTACCCAACCATCATGAGCCAGCAGGTCTGCATC ATCCTGATTGTTCTTGCCTGGATAGGGTCTTTAATACACTCTACAGCTCAGATTATCCTG GCCTTAAGATTGCCTTTCTGTGGACCCTATTTGATTGATCATTATTGCTGTGATTTGCAG CCCTTGTTGAAACTTGCCTGCATGGACACTTACATGATCAACCTGCTGTTGGTGTCTAAC AGTGGGGCAATTTGCTCAAGTAGTTTCATGATTTTGATAATTTCATATATTGTCATCTTG CATTCACTGAGAAACCACAGTGCCAAAGGGAAGAAAAAGGCTCTCTCCGCTTGCACGTCT CACATAATTGTAGTCATCTTATTCTTTGGCCCATGTATATTCATATATACACGCCCCCCG ACCACTTTCCCCATGGACAAGATGGTGGCAGTATTTTATACTATTGGAACACCCTTTCTC AATCCACTCATCTACACACTGAGGAATGCAGAAGTGAAAAATGCCATGAGAAAGTTATGG CATGGCAAAATTATTTCAGAAAACAAAGGA |
Conceptual translation |
MQQNNSVPEFILLGLTQDPLRQKIVFVIFLIFYMGTVVGNMLIIVTIKSSRTLGSPMYFF LFYLSFADSCFSTSTAPRLIVDALSEKKIITYNECMTQVFALHLFGCMEIFVLILMAVDR YVAICKPLRYPTIMSQQVCIILIVLAWIGSLIHSTAQIILALRLPFCGPYLIDHYCCDLQ PLLKLACMDTYMINLLLVSNSGAICSSSFMILIISYIVILHSLRNHSAKGKKKALSACTS HIIVVILFFGPCIFIYTRPPTTFPMDKMVAVFYTIGTPFLNPLIYTLRNAEVKNAMRKLW HGKIISENKG Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,371,285 | 55,371,284 | Ins(1) | -/C | rs34651794 (DbSNP) | |
11 | 55,371,132 | 55,371,132 | NS | A/T | S/T | rs7114415 (DbSNP) |
11 | 55,371,807 | 55,371,807 | NS | A/T | L/I | rs11230346 (DbSNP) |
11 | 55,371,313 | 55,371,313 | NS | C/A | L/F | rs61735721 (DbSNP) |
11 | 55,371,410 | 55,371,410 | NS | C/G | W/S | rs61732335 (DbSNP) |
11 | 55,371,673 | 55,371,673 | NS | C/G | L/F | rs61730928 (DbSNP) |
11 | 55,371,699 | 55,371,699 | NS | G/A | R/W | rs61730871 (DbSNP) |
11 | 55,371,275 | 55,371,275 | NS | G/A | T/M | rs61743011 (DbSNP) |
11 | 55,371,021 | 55,371,021 | NS | G/T | P/T | rs2456022 (DbSNP) |
11 | 55,371,828 | 55,371,828 | NS | G/T | P/T | rs491160 (DbSNP) |
11 | 55,371,747 | 55,371,747 | NS | T/C | R/G | rs61737219 (DbSNP) |
11 | 55,371,039 | 55,371,039 | NS | T/C | I/V | rs61747888 (DbSNP) |
11 | 55,603,905 | 55,603,905 | nonsense SNP | G/A | Q/* | 1000GP (CEU) |
11 | 55,604,331 | 55,604,331 | NS | A/T | L/I | 1000GP (CEU, CHBJPT) |
11 | 55,604,352 | 55,604,352 | NS | G/T | P/T | 1000GP (CEU) |
11 | 55,603,656 | 55,603,656 | NS | A/T | S/T | 1000GP (CEU) |
11 | 100 | -100 | NS | C/T | A/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,359,025 | 55,470,359 | CopyNumber | Variation_0419 (DGV), Variation_34977 (DGV) |
11 | 55,371,807 | 55,373,703 | CopyNumber | Variation_1890 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 55,367,167 | 55,452,993 | CopyNumber | Variation_6923 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,371,021 | 55,422,586 | CopyNumber | Variation_9662 (DGV), Variation_48831 (DGV) |
11 | 55,360,213 | 55,447,427 | CopyNumber | Variation_9663 (DGV), Variation_48827 (DGV) |
11 | 55,371,021 | 55,447,427 | CopyNumber | Variation_10359 (DGV), Variation_48834 (DGV), Variation_48835 (DGV) |
11 | 55,371,021 | 55,418,182 | CopyNumber | Variation_10361 (DGV), Variation_48830 (DGV), Variation_53101 (DGV) |
11 | 55,364,237 | 55,431,910 | Inversion | Variation_29474 (DGV) |
11 | 55,360,213 | 55,447,426 | CopyNumber | Variation_29606 (DGV) |
11 | 55,371,020 | 55,460,788 | CopyNumber | Variation_29910 (DGV) |
11 | 55,367,884 | 55,459,183 | CopyNumber | Variation_31823 (DGV) |
11 | 55,362,651 | 55,460,561 | CopyNumber | Variation_34978 (DGV) |
11 | 55,358,496 | 55,434,466 | CopyNumber | Variation_37484 (DGV) |
11 | 55,368,154 | 55,450,788 | CopyNumber | Variation_38972 (DGV) |
11 | 55,365,425 | 55,431,552 | CopyNumber | Variation_41253 (DGV) |
11 | 55,335,878 | 55,453,486 | CopyNumber | Variation_48051 (DGV) |
11 | 55,360,213 | 55,442,368 | CopyNumber | Variation_48826 (DGV) |
11 | 55,360,213 | 55,470,003 | CopyNumber | Variation_48828 (DGV) |
11 | 55,371,021 | 55,408,700 | CopyNumber | Variation_48829 (DGV) |
11 | 55,371,021 | 55,437,126 | CopyNumber | Variation_48832 (DGV) |
11 | 55,371,021 | 55,442,368 | CopyNumber | Variation_48833 (DGV) |
11 | 55,371,021 | 55,460,095 | CopyNumber | Variation_48836 (DGV) |
11 | 55,339,829 | 55,447,427 | CopyNumber | Variation_53140 (DGV) |
11 | 55,360,213 | 55,490,377 | CopyNumber | Variation_53507 (DGV) |
11 | 55,360,213 | 55,460,788 | CopyNumber | Variation_53994 (DGV) |
11 | 55,360,213 | 55,470,994 | CopyNumber | Variation_54018 (DGV) |
11 | 55,364,677 | 55,453,061 | CopyNumber | Variation_65955 (DGV) |
11 | 55,366,131 | 55,452,023 | CopyNumber | Variation_75644 (DGV) |
11 | 55,365,707 | 55,452,023 | CopyNumber | Variation_85779 (DGV) |
Deletion | 252 (Hasin) | |||
11 | 55,368,920 | 55,371,949 | Deletion | #14 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
V271I | S240T | A237T | M192T | Q157* | W147S | L15I | P8T | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|
1 | V | S | A | M | Q | W | L | P | 58.45 | 0.274 |
2 | V | S | A | M | Q | W | I | P | 27.11 | 0.274 |
3 | V | S | A | M | * | W | L | P | 5.45 | 1.200 |
4 | V | T | A | M | Q | W | L | T | 3.30 | 0.059 |
5 | V | S | A | M | Q | S | L | P | 2.53 | 0.274 |
6 | V | S | A | M | Q | W | L | T | 2.23 | 0.274 |
7 | V | S | A | T | Q | W | L | T | 0.46 | 0.274 |
8 | I | S | A | M | Q | W | I | P | 0.31 | 0.274 |
9 | V | S | T | M | Q | W | L | P | 0.15 | 0.093 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR4C11.aApr07-unspliced | main_exon | 3UTR | chr11 | 55,603,441 | 55,603,444 | - |
CDS | chr11 | 55,603,444 | 55,604,373 | - |