OR4C14P Olfactory Receptor
| Gene Symbol | OR4C14P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-129, HsOR11.11.14P, ORL3654 |
| External Ids | HGNC: 15170 GeneBank: BK004779, NG_004234 ORDB: ORL3654 |
| Build #39 labels | OR4C14P |
| Chromosomal location | 11:55,537,002-55,537,924 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C6 | 69.26% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C59 | 72% | 308 |
| Mouse | Or4c102 | 71% | 306 |
| Rat | Or4c102 | 71% | 305 |
| Cow | OR4C163P | 65% | 314 |
| Orang | OR4C9P | 57% | 305 |
| Horse | OR4C203 | 75% | 308 |
| Chimp | OR4C6 | 69% | 309 |
Sequence information
| Nucleotide sequence |
ATGGGGACTTCAAATAATGAGACTGAATTCATTCTTTTGGGCATTACAAAAAATCCAGAA CTAAGGAAAATATTCTCTGCTTTGTTTCTAGCCATGTATGTGACCACAGTGTTGGGAAAT CTATTCATTGTGGTGACTCTGGCTGCAAGTTGGAGTCTGAGATCACCTATGTACTTTTCC CTTACTTCCTTGTCTCTCATGGGTGCCACCTACTCTTCCATCACTGCCCCTAAGATGACT GTGGACTCTTTGAGAACACTACCATTTCCCTTGAAGGCTGCATGACCCAGCTCTTTGCAG AGCATTTCTCTGATGGTGTAGCGATCATCCTTCTCACTGTGATGGTCTGTGACTGCTATG AGGCCATCAGTAAGCCCCTGCATGACACAACCATCATGAGTCCACGGGTGTGCTGCTGTT GGTGGTAGAAGCTTGGGTGGGGGGATTAACACATGCCACAATACAGCTTTTTTTTTTTCA TATATCAAATACCCTTCTGTGGTCCCAATATTATTGACCATTTTATATGTGATTTGTTTC CATTGTTAAAACTTGCTTACATGGACACCCACATGCTGGGTCTCTTAGTCATCCTCAACA GTGGGGTGATGTGTATGGCCATCTTCCTTATCCTAATTGCATCCTACATTGTCACCCTGT ACTCTCTGAAGTCTTGCAGCTCGGTAGGTTGACGCAACACACTTTCCACCTGTGGCTCCC ACCACACAGTGGTCATCTTGTTCTTCGTGGAGTGTATTTTCTTGTACATAAGACCTGTGG TCACTTACCCCATAGACAAGGATATGGCTATTTCCTTTACTATTGTTGCACCCATGTTAA ATCCTCTGATCTATACCCTGAGGGGCATCAAGGTAAAAAATGCCATAAGAAAAATGTGGA TGAAACAGGGGACCCTAGGTGGT |
| Conceptual translation |
MGTSNNETEFILLGITKNPELRKIFSALFLAMYVTTVLGNLFIVVTLAASWSLRSPMYFS LTSLSLMGATYSSITAPKMTV/LFENTTISLEGCMTQLFAEHFSDGVAIILLTVMVCDC YEAISKPLHDTTIMSPRVC/LLVVEAWVGGLTHATIQLFFF\YQIPFCGPNIIDHFIC DLFPLLKLAYMDTHMLGLLVILNSGVMCMAIFLILIASYIVTLYSLKSCSSVGXNTLST CGSHHTVVILFFVECIFLYIRPVVTYPIDKDMAISFTIVAPMLNPLIYTLRGIKVKNAIR KMWMKQGTLGG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,304,945 | 55,304,944 | Ins(1) | -/T | rs5791950 (DbSNP) | |
| 11 | 55,304,946 | 55,304,945 | Ins(1) | -/T | rs71786600 (DbSNP) | |
| 11 | 55,304,835 | 55,304,835 | SNP | A/G | rs11230088 (DbSNP) | |
| 11 | 55,305,250 | 55,305,250 | SNP | A/G | rs34099327 (DbSNP) | |
| 11 | 55,305,322 | 55,305,322 | SNP | C/T | rs35968796 (DbSNP) | |
| 11 | 55,304,962 | 55,304,962 | SNP | C/T | rs56266612 (DbSNP) | |
| 11 | 55,305,170 | 55,305,170 | SNP | C/T | rs61917927 (DbSNP) | |
| 11 | 55,305,297 | 55,305,297 | SNP | C/T | rs12277428 (DbSNP) | |
| 11 | 55,305,167 | 55,305,167 | SNP | C/T | rs474915 (DbSNP) | |
| 11 | 55,304,719 | 55,304,719 | SNP | G/T | rs11823379 (DbSNP) | |
| 11 | 55,304,647 | 55,304,647 | SNP | G/T | rs1459103 (DbSNP) | |
| 11 | 55,305,160 | 55,305,160 | SNP | G/T | rs61917926 (DbSNP) | |
| 11 | 55,537,171 | 55,537,171 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 55,537,359 | 55,537,359 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 55,537,486 | 55,537,486 | SNP | T/C | 1000GP (CEU) | |
| 11 | 55,537,684 | 55,537,684 | SNP | G/T | 1000GP (CEU) | |
| 11 | 55,537,691 | 55,537,691 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 55,537,694 | 55,537,694 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,537,774 | 55,537,774 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,537,846 | 55,537,846 | SNP | T/C | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
| 11 | 55,276,602 | 55,355,722 | CopyNumber | Variation_9186 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.