OR4C2P Olfactory Receptor
| Gene Symbol | OR4C2P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-102, OR11-103, HsOR11.8.10P, ORL3739 |
| External Ids | HGNC: 14696 GeneBank: AB065547, AB065568, BK004694, BK004807 ORDB: ORL3739 |
| Build #39 labels | OR4C2P |
| Chromosomal location | 11:48,420,244-48,421,171 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C12 | 88.35% | 309 |
| OR4C50P | 90.29% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C12 | 84% | 309 |
| Dog | OR4C12C | 83% | 309 |
| Mouse | Or4c12 | 82% | 309 |
| Mouse | Or4c12b | 82% | 304 |
| Rat | Or4c12 | 83% | 303 |
| Rat | Or4c12b-ps | 82% | 302 |
| Cow | OR4C12 | 81% | 309 |
| Cow | OR4C12DP | 82% | 276 |
| Orang | OR4C9P | 64% | 307 |
| Horse | OR4C2 | 80% | 304 |
| Chimp | OR4C12 | 88% | 309 |
Sequence information
| Nucleotide sequence |
ATGAAGAATAAAAGGAATGTGACTGAATTCGTTTTAACAGGTCTTACACAGAACCCTAAA ATGGAGAAAGTCATGTTTGCAGTATTTTTGGTTCTTTACATGATAACACTTTCAGGCAAC CTGCTCCTTGTGGTTACAATTACCACCAGCCAGGCTCTTAGCTCCCCCATGTACTTCTTC CTGAGCCACCTTTCTTTGATAGACACAGTTTATTCTTCTTCTTCAGCTCCTAAGTTGATT GTCGATTCCCTTCATGAGAAGAAAATCATCTCCTTTAATGGGTGTATGGCTCAAGCCTAT GAAGAACACATTTTTGGTGCTACTGAGATCATCCTGCTGACAGTGATGGCCTGTGACAAC TATGTGGCCATCTGCAAACCTCTGCACTACACAACCATCATGAGCCACAGCCTGTGCATT CTCCTAGTGGTAGTGGCCTGGATAGGAGGATTTCTCCATGCAAATATTCAGATTCTATTT ACAGTATGGCTGCCCTTCTGTGGCCCCAATGTCATAGACCACTTCATGTGTGACTTGTGC CCTTTGTTAAAACTTGTTTGCCTGGACACTCATACCCTTGGTCTCTTTGTTGCTGCCAAC AGTGGGTTCATCTGCTTATTAAACTTCCTTCTCTAGGTGGTATCCTATGTGATCATCTTG AGATGTTTAAAGAACTATATCTTGGAGGGGAGGGGTAAAGCCCTCTCCACCTGTATTTCT CACATCATAATAGTTGTCTTATTCTTTGTGCCTTGTATATTTGTGTATCTGCACCCAGTG ACAAACTCTGCCCATTGATAAAGCTGCTGCTGTATTTTATACTATGGTGGTCCCAATGTT AAATCCTTTGATCTACACACTCAGAAATGCTGAGGTAAAAAGTGCAATAAGGAAGCTTTG GAGAAAAAAAGTTATTTCAGATAATGAC |
| Conceptual translation |
MKNKRNVTEFVLTGLTQNPKMEKVMFAVFLVLYMITLSGNLLLVVTITTSQALSSPMYFF LSHLSLIDTVYSSSSAPKLIVDSLHEKKIISFNGCMAQAYEEHIFGATEIILLTVMACDN YVAICKPLHYTTIMSHSLCILLVVVAWIGGFLHANIQILFTVWLPFCGPNVIDHFMCDLC PLLKLVCLDTHTLGLFVAANSGFICLLNFLLXVSYVIILRCLKNYILEGRGKALSTCIS HIIIVVLFFVPCIFVYLHPVTN\PIDKAAAVFYTMVVPMLNPLIYTLRNAEVKSAIRKL WRKKVISDND Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 48,441,811 | 48,441,810 | Ins(1) | -/G | rs34816197 (DbSNP) | |
| 11 | 48,441,837 | 48,441,836 | Ins(1) | -/G | rs35924957 (DbSNP) | |
| 11 | 48,442,264 | 48,442,264 | SNP | A/C | rs61917511 (DbSNP) | |
| 11 | 48,441,874 | 48,441,874 | SNP | C/G | rs4882060 (DbSNP) | |
| 11 | 48,420,322 | 48,420,322 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,420,701 | 48,420,701 | SNP | A/T | 1000GP (CEU) | |
| 11 | 48,420,712 | 48,420,712 | SNP | C/A | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | G/C | 1000GP (YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| CopyNumber | 7 (Hasin) | |||
| 11 | 48,441,696 | 48,444,723 | Deletion | #202 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.