OR4C45 Olfactory Receptor
| Gene Symbol | OR4C451 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 0.65 (pseudogene) |
| Aliases | HsOR11.9.7 |
| External Ids | HGNC: 31270 GeneBank: NM_001005513 |
| Build #39 labels | |
| Chromosomal location | :- () |
| Cluster | |
| Synteny | CLIC#26 |
| Remarks | no location in hg. 19 |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C10P | 65.08% | 295 |
| OR4C46 | 61.97% | 305 |
| OR4C5 | 62.13% | 301 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C45B | 81% | 306 |
| Mouse | Or4c126 | 78% | 305 |
| Rat | Or4c52 | 77% | 306 |
| Cow | OR4C189P | 76% | 298 |
| Orang | OR4C148P | 90% | 209 |
| Horse | OR4C204 | 78% | 306 |
| Chimp | OR4C5P | 64% | 301 |
Sequence information
| Nucleotide sequence |
ATGAACAATGTAACAGAATTCATCCTGCTGGGCCTCACTCACAATCCAGAACTGCAGAAA TTCCTGTTTGTTATGTTTTTAATCACCTACTTGATCACACTGGCAGGTAACCTGCTCATC TCAGTCATCATCTTCATCAGCCCAGCCCTGGGTTCCCCCATGTACCTTTTTCTGTCCTAT TTATCCATTATAGATATTTTCTACTCTTCTTCCATAGCCCCTAAAATGATCTTTGACTTG ATCTCTGAAAACAACACCATATCCTTCAATGGCTGCATGACTCAGCTCTTCACAGAACAT TTCTTTGCGGCAGCTGAGACCATCTTATTAAGTGTCATGGCCTACGACTGCTATGTGGCC ATCTGTAAGCCCTTGCACTATGCAACCATCATGACCCAATCTATGTGTGGATTCCTGATG GTGGTGGCTGGAATTCTGGGATTTGTGCATGGAGGAATCCAGACTTTGTTCATAGCCCAG TTACCATTCTGTGGCCCCAATGTCATCGACCACTTTATGTGTGATTTAGTACCTCTTCTG GAGCTGGCCTGCACAGACACTCACACTTTAGGGCCTCTGATTGCTGCCAACAGTGGGTCA CTGTGTTTCCTCATTTTTTCCATACTGGATGCTTCCTATGTCATCATCTTGTGCTCCCTA AGGTCTCATAGCTCTGAAGGGCATCTCAAAGCTCTGTCTAGTTGTGCCTCTCATATCTTC ACTGTCATCTTATTCTTTGTCCCTTGTTCATACCTGTATCTAAGACCTCTAACCTCCTTC CCCACTGACAAAGCTGTGACTGTGTTTTGCACCCTATTTACACCTATGTTGAACCCTTTA ATCTACACTGTCAAAAATAAAGCAGTGAAAAATGTCATTAAGAAGCTCTGGAAGCAAATA ATGACAACTGATGATAAA |
| Conceptual translation |
MNNVTEFILLGLTHNPELQKFLFVMFLITYLITLAGNLLISVIIFISPALGSPMYLFLSY LSIIDIFYSSSIAPKMIFDLISENNTISFNGCMTQLFTEHFFAAAETILLSVMAYDCYVA ICKPLHYATIMTQSMCGFLMVVAGILGFVHGGIQTLFIAQLPFCGPNVIDHFMCDLVPLL ELACTDTHTLGPLIAANSGSLCFLIFSILDASYVIILCSLRSHSSEGHLKALSSCASHIF TVILFFVPCSYLYLRPLTSFPTDKAVTVFCTLFTPMLNPLIYTVKNKAVKNVIKKLWKQI MTTDDK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | G/A | M/I | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | T/C | I/I | 1000GP (YRI, YRI, YRI, YRI, YRI) |
| 11 | 50,103,012 | 50,103,012 | SYN | T/C | I/I | 1000GP (CEU) |
| 11 | 50,103,132 | 50,103,132 | SYN | C/T | P/P | 1000GP (CEU, CHBJPT) |
| 11 | 50,103,144 | 50,103,144 | SYN | T/G | S/S | 1000GP (CEU, CHBJPT) |
| 11 | 50,103,477 | 50,103,477 | SYN | A/G | L/L | 1000GP (CEU, CHBJPT) |
| 11 | 50,103,660 | 50,103,660 | SYN | C/T | S/S | 1000GP (CHBJPT) |
| 11 | 50,103,671 | 50,103,671 | NS | C/T | P/L | 1000GP (CEU, CHBJPT) |
| 11 | 50,103,754 | 50,103,754 | NS | T/A | S/T | 1000GP (CEU, CHBJPT) |
| 11 | 50,103,762 | 50,103,762 | SYN | A/G | T/T | 1000GP (CHBJPT) |
| 11 | 50,103,901 | 50,103,901 | NS | C/T | H/Y | 1000GP (CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.