OR4C4P Olfactory Receptor
| Gene Symbol | OR4C4P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-101, HsOR11.8.7P, ORL3740 |
| External Ids | HGNC: 14700 GeneBank: BK004583 ORDB: ORL3740 |
| Build #39 labels | OR4C4P, OR4C17P |
| Chromosomal location | 11:48,345,351-48,352,456 (-) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks | On november 20, 2010 OR4C4P was merged wirh OR4C17P. The two ORs code for a single pseudogene, disrupted by Line repeat. |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C45 | 91.39% | 209 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB528861 |
Sequence information
| Nucleotide sequence |
ATGAAAAAGATGAACAATGTAATAGAATTCATACTGCTGGGCCTCACTCACAATCCAGAA CTGCAGAAATTCTTGTTTGTTATGTTTTTAATCACCTACTTGATCACATTGGCAGGTAAC CTGTTCATCTCAGTCATCATCTTCATCAGCCCAGCCCTGGGTTCCCCCATGTACTCTTTT CCGTCCTATTTGTTCATTATAGACATTTTCTGCTCTTCTTCCATAGCCCCTAAAATGAAC TTTGACTTGATCTCTGAAAAGAACACCATATCCTTCAATGGCTGCATGACTCAGCTCTTC ACAGAACATTTCTTTGAGGCAGCTGAGATCATCTTATTAAGTGTCATGGCCTATGACCAC TATGTGGCCATCCGTAAGCCCTTGCACTATGCAACCATCATGAGCCAACCTATGTGTGGA TTCCTGATGGTGGTGGCTGGGATTCTGGGATTTGTGCATGGAGGGATCCAGACTTTGTTC ATAGCCCAGTTACCATTCTGTGGCCCCAATGTCATCAACCACTTTATGTGTGATTTAGTA CCTCTTCTGGAGCTGGCCTGCACAGACACTCACACCTTGGGGCCTCTGATTGCTGCCAAC AGTGGGTCACTGTGTTTCCTCATTTTTTCCATGCTGGTTGCTTCCTATGTCATCATCCTG TGCTTCCTGAGGACTCATAGCTCTGAAGGGCGTCGCAAAGCTCTGTCTAGTTGTGCCTCT CATATCTTCATTGTCATCTTATTCTTTGTCCCTTTTTCATACCTGTATCTAAGACCTAAC CTCCTTCCCCACTGACAAAGCTGTGACTGTGTTTTGCACCCTATTTACACCTATGTTGAA CCCTTTAATCTACACCCTCAAAAATAAAGAAGTGAAAAATGTCATTAAGAAGCTCTGGAA GCAAATAATGACAACTGATGATAAA |
| Conceptual translation |
Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 48,373,747 | 48,373,747 | Del(1) | -/T | rs71045567 (DbSNP) | |
| 11 | 48,374,007 | 48,374,006 | Ins(1) | -/T | rs66770722 (DbSNP) | |
| 11 | 48,374,002 | 48,374,001 | Ins(1) | -/T | rs66929749 (DbSNP) | |
| 11 | 48,367,054 | 48,367,053 | Ins(2) | -/AG | rs66653913 (DbSNP) | |
| 11 | 48,367,052 | 48,367,051 | Ins(2) | -/AG | rs34597308 (DbSNP) | |
| 11 | 48,367,529 | 48,367,529 | large insertion | 6181bp insertion | rs71787435 (DbSNP) | |
| 11 | 48,373,946 | 48,373,946 | SNP | A/C | rs12797020 (DbSNP) | |
| 11 | 48,367,073 | 48,367,073 | SNP | A/C | rs7941588 (DbSNP) | |
| 11 | 48,367,097 | 48,367,097 | SNP | A/G | rs73453179 (DbSNP) | |
| 11 | 48,367,499 | 48,367,499 | SNP | A/G | rs72896822 (DbSNP) | |
| 11 | 48,373,770 | 48,373,770 | SNP | A/T | rs73453191 (DbSNP) | |
| 11 | 48,373,820 | 48,373,820 | SNP | C/A | rs3898634 (DbSNP) | |
| 11 | 48,373,748 | 48,373,748 | SNP | C/G | rs73453188 (DbSNP) | |
| 11 | 48,373,797 | 48,373,797 | SNP | C/T | rs72896825 (DbSNP) | |
| 11 | 48,367,363 | 48,367,363 | SNP | C/T | rs73453183 (DbSNP) | |
| 11 | 48,367,311 | 48,367,311 | SNP | C/T | rs73453180 (DbSNP) | |
| 11 | 48,373,986 | 48,373,986 | SNP | G/A | rs12420054 (DbSNP) | |
| 11 | 48,367,511 | 48,367,511 | SNP | G/T | rs72896823 (DbSNP) | |
| 11 | 48,345,406 | 48,345,406 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,345,419 | 48,345,419 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 48,345,697 | 48,345,697 | SNP | C/T | 1000GP (CEU) | |
| 11 | 48,345,700 | 48,345,700 | SNP | G/A | 1000GP (CEU) | |
| 11 | 48,345,835 | 48,345,835 | SNP | C/T | 1000GP (CEU) | |
| 11 | 48,345,903 | 48,345,903 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,345,918 | 48,345,918 | SNP | G/A | 1000GP (CEU) | |
| 11 | 48,345,947 | 48,345,947 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,345,959 | 48,345,959 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,352,245 | 48,352,245 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 48,352,253 | 48,352,253 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,352,394 | 48,352,394 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,352,424 | 48,352,424 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,352,434 | 48,352,434 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 48,345,420 | 48,345,420 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 48,352,196 | 48,352,196 | SNP | C/G | 1000GP (CHBJPT) | |
| 11 | 48,352,218 | 48,352,218 | SNP | T/A | 1000GP (CHBJPT) | |
| 11 | 48,352,263 | 48,352,263 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 48,352,265 | 48,352,265 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 48,352,275 | 48,352,275 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 48,352,333 | 48,352,333 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 48,352,348 | 48,352,348 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 48,352,384 | 48,352,384 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 48,352,447 | 48,352,447 | SNP | T/C | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV), Variation_2922 (DGV) |
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV), Variation_3848 (DGV) |
| 11 | 48,367,529 | 48,373,709 | CopyNumber | Variation_5626 (DGV), Variation_5626 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV), Variation_9183 (DGV) |
| 11 | 48,367,292 | 48,375,858 | CopyNumber | Variation_23169 (DGV), Variation_23169 (DGV) |
| 11 | 48,367,271 | 48,373,949 | CopyNumber | Variation_61136 (DGV), Variation_61136 (DGV) |
| 11 | 48,366,970 | 48,374,599 | CopyNumber | Variation_101213 (DGV), Variation_101213 (DGV) |
| 11 | 48,371,686 | 48,374,108 | CopyNumber | #150 (Waszak) |
| 11 | 48,364,903 | 48,367,630 | CopyNumber | #173 (Waszak) |
| 11 | 48,367,475 | 48,373,868 | Del(-6183) | #10(modil), #11(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.