OR4H12P Olfactory Receptor
| Gene Symbol | OR4H12P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-4, HsOR14.1.4P |
| External Ids | HGNC: 19433 GeneBank: AB065963, BK004487, NG_004089 |
| Build #39 labels | OR4H12 |
| Chromosomal location | 14:19,759,910-19,760,785 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks | Coding for partial protein |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4H6P | 92.12% | 292 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4H12 | 91% | 277 |
| Dog | OR4H12B | 90% | 277 |
| Mouse | Or4s2b | 62% | 286 |
| Rat | Or4s2 | 63% | 280 |
| Cow | OR4H12 | 87% | 280 |
| Orang | OR4H12B | 94% | 277 |
| Orang | OR4H12CP | 93% | 276 |
| Orang | OR4H12DP | 94% | 196 |
| Horse | OR4H12 | 90% | 280 |
| Chimp | OR4S2 | 62% | 286 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | GD258177 |
| GNF Atlas2 | gnf1h02812_at |
| GNF Atlas2 | gnf1h10940_s_at |
Sequence information
| Nucleotide sequence |
ATGCGATGGATATTCTTTGTCTTATTTCTCCTCTTCTACATCGTGATCATGGTGGGAAAT TTGCTCATTTTTCTTATGGTCTTTTCTGACCCCCAACTACACACACCCATGTATTTCTTC CTCAGTAACCTGTCTTTTGTGGACATTGCCTATTCCTCGGCCACAGCACCCAAGATGATT GCAGACTTTGTTTCTGAGAAAAAGACTATTTCCTACTGGGGCTGTATAACTCAGATGTTT ACCTTCCACTTTTTTGGTTGTGCTGAGATTTTTGTTTTGACTGTCATGGCTTTTGATCGC TATGCTGCTATCTGCCAACCCCTCCGTTACACTGTCATCATGAGTGCTAATGCTTGTACT GTGCTGGCATCACTGTCCTGGTTGGGGGCCCTGGGTCATTCCTTTGTTCAGACCCTCCTG ACCTTCCAGCTGCCCTTCTGTAATGCTCAGGTTATAGACCATTACTTTTGTGATGTCCAC CCAGTCCTAAAACTTGCCTGTGCTGATACAACTCTGATAAATATGTTGGTAGTTGCCAAC AGTGGTCTCATCTCCCTGGGTTGTTTCCTCATTCTTTTGGCCTCCTACAAAGTCATTCTG CTTAGTCTTCAAAAACAGTCTGCAGAGAGCCGACGCAAAGCTCTCTCTACCTGTGGATCT CATCTGACTGTAGTAACTTTCTTCTTTGTTCCGTGTATCTTTATTTATCTCCGTCCATCC ACTACTTTCCCATTGGATAAAGCTGTGTCTGTGTTCTATACCACCATCACCCCAATGTTG AACCCACTCATCTATACTCTGAGGAATGAGGATGTAAAGAATGCCATGAGGCAGCTATGG AGTAGCAAGATCTCCTTGAAGGAAAAACAGAGAGGA |
| Conceptual translation |
MRWIFFVLFLLFYIVIMVGNLLIFLMVFSDPQLHTPMYFFLSNLSFVDIAYSSATAPKMI ADFVSEKKTISYWGCITQMFTFHFFGCAEIFVLTVMAFDRYAAICQPLRYTVIMSANACT VLASLSWLGALGHSFVQTLLTFQLPFCNAQVIDHYFCDVHPVLKLACADTTLINMLVVAN SGLISLGCFLILLASYKVILLSLQKQSAESRRKALSTCGSHLTVVTFFFVPCIFIYLRPS TTFPLDKAVSVFYTTITPMLNPLIYTLRNEDVKNAMRQLWSSKISLKEKQRG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,228,777 | 20,228,776 | Ins(1) | -/A | rs35949149 (DbSNP) | |
| 14 | 20,228,250 | 20,228,250 | SNP | A/C | rs61976671 (DbSNP) | |
| 14 | 20,228,354 | 20,228,354 | SNP | A/G | rs12889503 (DbSNP) | |
| 14 | 20,228,227 | 20,228,227 | SNP | A/G | rs61976670 (DbSNP) | |
| 14 | 20,228,302 | 20,228,302 | SNP | A/G | rs7148334 (DbSNP) | |
| 14 | 20,228,864 | 20,228,864 | SNP | A/T | rs4601962 (DbSNP) | |
| 14 | 19,760,143 | 19,760,143 | SNP | G/A | 1000GP (CEU) | |
| 14 | 19,760,705 | 19,760,705 | SNP | A/T | 1000GP (CEU) | |
| 14 | 19,760,706 | 19,760,706 | SNP | C/T | 1000GP (CEU) | |
| 14 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,197,616 | 20,399,048 | CopyNumber | Variation_0316 (DGV) |
| 14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 20,080,166 | 20,271,356 | CopyNumber | Variation_4824 (DGV) |
| 14 | 20,095,109 | 20,231,601 | CopyNumber | Variation_4825 (DGV) |
| 14 | 20,219,649 | 20,415,445 | CopyNumber | Variation_4826 (DGV) |
| 14 | 19,117,183 | 20,424,605 | CopyNumber | Variation_7028 (DGV) |
| 14 | 20,203,125 | 20,483,660 | CopyNumber | Variation_8762 (DGV) |
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,433,044 | CopyNumber | Variation_9234 (DGV) |
| 14 | 20,177,234 | 20,424,604 | CopyNumber | Variation_30648 (DGV) |
| 14 | 19,360,239 | 20,424,604 | CopyNumber | Variation_31953 (DGV) |
| 14 | 20,203,125 | 20,525,833 | CopyNumber | Variation_34547 (DGV) |
| 14 | 20,203,125 | 20,456,434 | CopyNumber | Variation_34575 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
| 14 | 20,203,125 | 20,455,307 | CopyNumber | Variation_34664 (DGV) |
| 14 | 19,670,757 | 20,331,117 | CopyNumber | Variation_37621 (DGV) |
| 14 | 20,200,183 | 20,423,372 | CopyNumber | Variation_38951 (DGV) |
| 14 | 19,349,922 | 20,424,856 | CopyNumber | Variation_58655 (DGV) |
| 14 | 20,177,210 | 20,424,753 | CopyNumber | Variation_66584 (DGV) |
| 14 | 20,194,500 | 20,255,301 | CopyNumber | Variation_71832 (DGV) |
| 14 | 19,781,170 | 20,424,776 | CopyNumber | Variation_71833 (DGV) |
| 14 | 20,198,061 | 20,307,453 | CopyNumber | Variation_71859 (DGV) |
| 14 | 20,152,622 | 20,419,574 | CopyNumber | Variation_76554 (DGV), Variation_87112 (DGV) |
| 14 | 20,185,336 | 20,310,638 | CopyNumber | Variation_76557 (DGV) |
| 14 | 20,179,862 | 20,261,582 | CopyNumber | Variation_87116 (DGV) |
| 14 | 20,196,206 | 20,245,238 | CopyNumber | Variation_87117 (DGV) |
| 14 | 20,201,654 | 20,343,302 | CopyNumber | Variation_87118 (DGV) |
| CopyNumber | 22 (Hasin) | |||
| 14 | 20,227,969 | 20,230,944 | CopyNumber | #160 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.