OR4H6P Olfactory Receptor
| Gene Symbol | OR4H6P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | H |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-58, OR4-114, OR4-115, OR4-119, OR15-9, OR15-69, OR15-80, OR15-81, OR15-71, OR15-82, OR5-39, OR5-84, HsOR15.1.7P, ORL3729 |
| External Ids | HGNC: 8312 GeneBank: AF399449, BK004753, NG_002307 ORDB: ORL3729 |
| Build #39 labels | OR4H6P, OR4H10P, OR4H5P, OR4H11P, OR4H8P |
| Chromosomal location | 15:22,056,709-22,057,639 (+) |
| Cluster | 15@22 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4H12P | 92.12% | 292 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4H12 | 88% | 309 |
| Dog | OR4H12B | 87% | 289 |
| Mouse | Or4s2b | 60% | 311 |
| Rat | Or4s2 | 60% | 305 |
| Cow | OR4H12 | 84% | 292 |
| Orang | OR4H12P | 93% | 311 |
| Orang | OR4H12B | 92% | 312 |
| Orang | OR4H12CP | 92% | 311 |
| Orang | OR4H12DP | 91% | 196 |
| Horse | OR4H12 | 88% | 312 |
| Chimp | OR4S2 | 59% | 311 |
Sequence information
| Nucleotide sequence |
ATGAAAGTGGCCAACAATGTCACTGAGTTTATATTCCTGGGACTTTCCCAAGATTCTGGA ATGCAATTGATGTTCTTTGTCTTATTTCTCCTCTTCTACGTCGTGATCATGGTGGGAAAT TTGCTCATTTTGCTTATGGTCTTTTCTGACTCCCGACTACACACACCCATGTATTTCTTC CTCAGTAACCTGTCTTTTGTGGACATTGCCTATTCCTCACCCACAGCACCCAAGATGATT GAAGACTTTGTTTCTGAGAAAAAGACTATTTCCTACTGGGGCTGTATAACTTAGATGTTT ACCTTCCACTTTTTTGGTTGTGCTGAGATTTTTGTTTTGACTGTCATGGCTTTTGATCGC TATGCTGCTATCTGCCAATCCCTCCGTTACACTGTCATCATGAGTGCTAATGCTTATACT GTGCTGGCATCACTGTCCTGGTTGGGGGCCCTGGGTCATTCCTTTGTTCAGACCCTCCTG ACCTTCCAGCTGCCCTTCTGTAATGCTCAGGTTATAGACCATTACTTTTGTGATGTCCAC CCAGTCCTAAAACTTGCCTGTGCTGATACAACTCTGGTAAATATGTTGGTGGTTGCCAAC AGTGGTCTCATCTCCCTGGGGTGTTTCCTCATTCTTTTGGCCTCCTACACAGTCATTCTG TTTAGTCTTCAAAAACAGTCTGCAGAGAGCTGACACAAAGTTCTCTCTACCTGTGGATCT CATCTGACTATAGTAACTTTCTTCTTTGTTCCGTGTATCTTTATTTATCTCCATCCACTA CTTTCCCATTGGATAAAGCTGTGTCTGTGTTCTATACCACCATCACCCCAATGCTGAACC CACTCATCTATACTCTGAGGAATGAGGAGTAAAGAATGCCATGAGGCGGCTATGGAGTAG CAAGATCTCCTTGAAGGAAAAGCAGAGAGGA |
| Conceptual translation |
MKVANNVTEFIFLGLSQDSGMQLMFFVLFLLFYVVIMVGNLLILLMVFSDSRLHTPMYFF LSNLSFVDIAYSSPTAPKMIEDFVSEKKTISYWGCITXFTFHFFGCAEIFVLTVMAFDR YAAICQSLRYTVIMSANAYTVLASLSWLGALGHSFVQTLLTFQLPFCNAQVIDHYFCDVH PVLKLACADTTLVNMLVVANSGLISLGCFLILLASYTVILFSLQKQSAESXKVLSTCGS HLTIVTFFFVPCIFIY/PSTTFPLDKAVSVFYTTITPMLNPLIYTLRNEE/KNAMRRL WSSKISLKEKQRG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI) | |
| 15 | 22,056,788 | 22,056,788 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 15 | 22,056,829 | 22,056,829 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 15 | 22,057,087 | 22,057,087 | SNP | T/C | 1000GP (CEU) | |
| 15 | 22,057,355 | 22,057,355 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 15 | 22,057,539 | 22,057,539 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 15 | 22,057,595 | 22,057,595 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 15 | 22,344,739 | 22,344,739 | SNP | C/T | rs58030160 (DbSNP) | |
| 15 | 22,344,780 | 22,344,780 | SNP | C/T | rs8038027 (DbSNP) | |
| 15 | 22,344,871 | 22,344,871 | SNP | A/G | rs28571003 (DbSNP) | |
| 15 | 22,344,879 | 22,344,879 | SNP | C/G | rs1366870 (DbSNP) | |
| 15 | 22,344,917 | 22,344,917 | SNP | A/G | rs57659982 (DbSNP) | |
| 15 | 22,344,951 | 22,344,951 | SNP | C/T | rs1366871 (DbSNP) | |
| 15 | 22,345,038 | 22,345,038 | SNP | C/T | rs1429471 (DbSNP) | |
| 15 | 22,345,097 | 22,345,097 | SNP | C/T | rs12440831 (DbSNP) | |
| 15 | 22,345,134 | 22,345,134 | SNP | C/G | rs13380116 (DbSNP) | |
| 15 | 22,345,158 | 22,345,158 | SNP | C/T | rs1529528 (DbSNP) | |
| 15 | 22,345,178 | 22,345,178 | SNP | A/C | rs61690271 (DbSNP) | |
| 15 | 22,345,275 | 22,345,275 | SNP | C/T | rs58381099 (DbSNP) | |
| 15 | 22,345,306 | 22,345,306 | SNP | A/C | rs12438744 (DbSNP) | |
| 15 | 22,345,413 | 22,345,413 | SNP | G/T | rs12917200 (DbSNP) | |
| 15 | 22,345,546 | 22,345,546 | SNP | C/T | rs13380139 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 20,003,725 | 23,814,757 | CopyNumber | Variation_3951 (DGV) |
| 15 | 20,143,651 | 23,690,892 | CopyNumber | Variation_3070 (DGV) |
| 15 | 20,161,372 | 22,351,239 | CopyNumber | Variation_49466 (DGV) |
| 15 | 20,161,372 | 22,368,110 | CopyNumber | Variation_49467 (DGV) |
| 15 | 20,161,372 | 22,449,059 | CopyNumber | Variation_49468 (DGV), Variation_49469 (DGV) |
| 15 | 20,161,372 | 22,755,185 | CopyNumber | Variation_49470 (DGV) |
| 15 | 20,161,372 | 23,226,254 | CopyNumber | Variation_49471 (DGV) |
| 15 | 20,167,086 | 22,588,036 | CopyNumber | Variation_8779 (DGV) |
| 15 | 20,167,086 | 22,862,959 | CopyNumber | Variation_34576 (DGV) |
| 15 | 20,167,086 | 22,869,764 | CopyNumber | Variation_8781 (DGV) |
| 15 | 20,167,086 | 23,222,284 | CopyNumber | Variation_9251 (DGV), Variation_34504 (DGV) |
| 15 | 20,167,086 | 23,854,707 | CopyNumber | Variation_8784 (DGV) |
| 15 | 20,167,089 | 22,588,036 | CopyNumber | Variation_9250 (DGV) |
| 15 | 20,167,089 | 22,869,763 | CopyNumber | Variation_34665 (DGV) |
| 15 | 20,167,089 | 23,222,284 | CopyNumber | Variation_34608 (DGV) |
| 15 | 20,171,787 | 22,646,418 | CopyNumber | Variation_31980 (DGV) |
| 15 | 20,198,198 | 22,591,284 | CopyNumber | Variation_30670 (DGV) |
| 15 | 20,266,957 | 22,674,466 | CopyNumber | Variation_0318 (DGV) |
| 15 | 20,397,403 | 22,698,551 | CopyNumber | Variation_7046 (DGV) |
| 15 | 20,422,586 | 22,588,019 | CopyNumber | Variation_34663 (DGV) |
| 15 | 20,541,678 | 22,368,898 | CopyNumber | Variation_58702 (DGV) |
| 15 | 20,610,110 | 22,575,858 | Inversion | Variation_0443 (DGV) |
| 15 | 20,625,544 | 22,559,977 | Inversion | Variation_0444 (DGV) |
| 15 | 20,851,594 | 22,588,036 | CopyNumber | Variation_34545 (DGV) |
| 15 | 20,852,150 | 23,222,284 | CopyNumber | Variation_8785 (DGV) |
| 15 | 20,879,638 | 22,777,875 | CopyNumber | Variation_9254 (DGV) |
| 15 | 20,935,075 | 22,777,875 | CopyNumber | Variation_8783 (DGV) |
| 15 | 21,012,524 | 23,222,284 | CopyNumber | Variation_9256 (DGV) |
| 15 | 21,054,356 | 22,453,425 | CopyNumber | Variation_76814 (DGV), Variation_87462 (DGV) |
| 15 | 21,072,035 | 22,588,019 | CopyNumber | Variation_34607 (DGV) |
| 15 | 21,097,124 | 22,449,059 | CopyNumber | Variation_9742 (DGV) |
| 15 | 21,200,251 | 22,588,036 | CopyNumber | Variation_8786 (DGV) |
| 15 | 21,276,422 | 22,453,425 | CopyNumber | Variation_87468 (DGV) |
| 15 | 21,362,809 | 22,453,425 | CopyNumber | Variation_76815 (DGV) |
| 15 | 22,262,145 | 22,453,425 | CopyNumber | Variation_76813 (DGV) |
| 15 | 22,262,185 | 22,373,349 | CopyNumber | Variation_72167 (DGV) |
| 15 | 22,262,185 | 22,596,129 | CopyNumber | Variation_72162 (DGV) |
| 15 | 22,265,649 | 22,591,752 | CopyNumber | Variation_37535 (DGV), Variation_37626 (DGV) |
| 15 | 22,286,537 | 22,453,425 | CopyNumber | Variation_87461 (DGV) |
| 15 | 22,287,131 | 22,399,235 | CopyNumber | Variation_59598 (DGV) |
| 15 | 22,302,006 | 22,588,022 | CopyNumber | Variation_38952 (DGV) |
| 15 | 22,304,940 | 22,427,590 | CopyNumber | Variation_72152 (DGV) |
| 15 | 22,307,069 | 22,474,088 | CopyNumber | Variation_2182 (DGV) |
| 15 | 22,320,036 | 22,588,036 | CopyNumber | Variation_8782 (DGV), Variation_34557 (DGV) |
| 15 | 22,320,057 | 22,588,019 | CopyNumber | Variation_9249 (DGV), Variation_34643 (DGV) |
| 15 | 22,320,057 | 22,777,875 | CopyNumber | Variation_9252 (DGV) |
| 15 | 22,343,976 | 22,373,055 | CopyNumber | Variation_72153 (DGV) |
| 15 | 22,344,560 | 22,347,590 | Deletion, CopyNumber | #261 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.