Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4K12P Olfactory Receptor

Gene Symbol OR4K12P1 (View this gene in GeneCards)
Family 4
Subfamily K
Pseudogene Yes
CORP pseudogene probability score
Aliases OR21-2, HsOR21.1.2P, ORL3800
External Ids HGNC: 15403   GeneBank: BK004616, NG_004160   ORDB: ORL3800   
Build #39 labels OR4K12P
Chromosomal location 21:13,581,072-13,582,004 (-)
Cluster 21@15
Synteny CLIC#0
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4K6P 93.27% 312
OR4K7P 97.75% 311

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4K6 86% 312
Mouse Or4k6 84% 312
Rat Or4k6 84% 312
Cow OR4K6 86% 312
Orang OR4K6P 90% 310
Horse OR4K6 86% 312
Chimp OR4K7P 98% 309
Chimp OR4K7BP 98% 309
Chimp OR4K7DP 97% 311
Chimp OR4K7CP 95% 310

Sequence information

Nucleotide sequence ATGGAGGGGTTTAACTATTCCAGAGTATCTGAATTCATGTTACTTGGACTTACTGATTCT
CCTGAACTCCAGATATTCTTTTTTGTGGTGTTTTCTGTCTTCTATTTAATGACCATGTTG
GGCAACTGCCTGATTTTACTCACTGTCCTATCCACCTCACACCTTCACTCTCGCACGTAC
TTCCTGCTCAGCAACCTGTCTCATTGACATGTGCCTGTCCTCCTTTGCCACACCAAAGAT
GATTATGGACTTTTTTGCTCTGCGTAAGACCATCTCTTTTGAAGGCTGCATTTCTCAGAT
CTTTTTTTTACACCTCTTCAATGGGACTGAGATTGTGCTGCTGATCTCCATGTCTTTTGA
CAGGTATATTGCCATATGTAAACCTCTCCGCTATTCAACAATTATGAGCCAAAGAGTGTG
TGTTGAGCTTGTGGCAGTTTCTTGTTGGACAGTGGGCTTTCTACATACAATGAGCCAATT
AGTTTTTCCCTCTATTTGCCCTTCTGTGTTCCCAATGTTGTAGACAGTTTTTTCTGTGAT
CTTCCTTTGGTCATCCAGTTAGCTTGTATAGATATTTATGTTCTTGGGACCTCCATGATT
TCAACCAGTGGTGTGACTGCTCTTACAAGTTTTCTGCTTTTGCTCACCTCCTACATCATT
GTTCTTAATACTATCAGGGACTACTCCTCCACAGGATCCTCCAAGGCTCTTTCTACCTGT
ACAGCACATTTTATTGTTGTGTTAATGTTCTTTGGGCCCTGTATTTTCATTTATGTGTGG
CCTTCCACAAACTTCCTGGTAGACAAAATTCTCTCTGTTTTCTATACCATCTTCACTCCC
TTTCTGAATCCACTTATCTATACTTTGAGAAACCAGGAAGTGAAGACAGCAATGAAGAAG
AAACTGAATATTCAGTATTTCAGTCTTGGGAAA
Conceptual translation MEGFNYSRVSEFMLLGLTDSPELQIFFFVVFSVFYLMTMLGNCLILLTVLSTSHLHSRTY
FLLSNLS\DMCLSSFATPKMIMDFFALRKTISFEGCISQIFFLHLFNGTEIVLLISMSF
DRYIAICKPLRYSTIMSQRVCVELVAVSCWTVGFLHTMSQLVFP/YLPFCVPNVVDSFF
CDLPLVIQLACIDIYVLGTSMISTSGVTALTSFLLLLTSYIIVLNTIRDYSSTGSSKALS
TCTAHFIVVLMFFGPCIFIYVWPSTNFLVDKILSVFYTIFTPFLNPLIYTLRNQEVKTAM
KKKLNIQYFSLGK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
21 14,953,600 14,953,600 SNP T/C rs71362470 (DbSNP)
21 14,953,653 14,953,653 SNP C/T rs2849101 (DbSNP)
21 14,953,782 14,953,782 SNP A/G rs7282746 (DbSNP)
21 14,953,843 14,953,843 SNP A/G rs8128504 (DbSNP)
21 14,954,256 14,954,256 SNP A/G rs12329836 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
21 14,369,207 15,152,897 CopyNumber Variation_8890 (DGV), Variation_34632 (DGV)
21 14,369,207 15,336,787 CopyNumber Variation_9322 (DGV)
21 14,432,699 15,336,787 CopyNumber Variation_3225 (DGV)
21 14,594,235 15,148,133 CopyNumber Variation_38448 (DGV)
21 14,634,532 15,339,752 CopyNumber Variation_4110 (DGV)
21 14,640,400 15,028,535 CopyNumber Variation_50729 (DGV)
21 14,640,400 15,105,485 CopyNumber Variation_50730 (DGV)
21 14,640,400 15,173,846 CopyNumber Variation_10591 (DGV)
21 14,691,329 14,969,929 CopyNumber Variation_8891 (DGV)
21 14,768,343 14,973,902 CopyNumber Variation_9828 (DGV)
21 14,910,018 15,073,331 CopyNumber Variation_0811 (DGV), Variation_2255 (DGV)
21 14,930,986 15,103,202 CopyNumber Variation_73606 (DGV)
21 14,943,339 15,105,485 CopyNumber Variation_50731 (DGV)
21 14,948,229 14,968,469 CopyNumber Variation_31058 (DGV)
21 14,951,393 14,954,425 Deletion #250 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.