OR4K16P Olfactory Receptor
| Gene Symbol | OR4K16P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-24, HsOR14.1.14P, ORL3714 |
| External Ids | HGNC: 15354 GeneBank: AF399443, BK004812, NG_004172 ORDB: ORL3714 |
| Build #39 labels | OR4K16P |
| Chromosomal location | 14:19,956,547-19,957,554 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K1 | 68.2% | 305 |
| OR4K15 | 64.5% | 307 |
| OR4K3P | 65.22% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4K1 | 68% | 308 |
| Mouse | Or4k1 | 66% | 308 |
| Rat | Or4k1-ps | 66% | 308 |
| Cow | OR4K1P | 70% | 304 |
| Orang | OR4K1 | 67% | 308 |
| Horse | OR4K16CP | 86% | 309 |
| Horse | OR4K16BP | 86% | 309 |
| Chimp | OR4K1 | 68% | 308 |
Sequence information
| Nucleotide sequence |
ATCTTAATTATCTTTTCTTCCCTCTAGATAACTTCAGCAGCTCAGATTCAGTTAATGGAT GGAGTAATAAATCAGTGGTTACTGAATTCAATTTGTTGGGGCTGTCTAGCTCTTGGGAAC TCCAAGTCTTCTTTTTCTTTATCTTCTCTGTGTTTTATGGAGCTGCAGTGTTGGGAAACA TCCTTATCATCATCACAGTAATTATAGACTCTCATTTGCATTCCCCAATGTACTTTCTTC TTAGCAATCTCTCTTCCATCGATGTGTGTCAGGCTACATTTGCCACTCCCAAGATGATTG CAGACTTCCTCAACGAACACAAGACCACCACTTTCCAGGGATGCATGTCACAAATCTTTT TCTTGCATGTTTTTGGGGGTAGTGAGATGGTGCTTCTTGTTGCCATGGCCTATGATAGAT ACATTGCTATATGCAAACCTCTGCACTACATGACCATCATGAACCGGAGGGTGTGAACTG TTCTGGTGGGGGTTTCCTGGGCCATTGGCATCTCACACTCAGCCACCCACCTGGCATTCA AAGTCAATCTGCCTTTCTGTGGACCCAACAGGGTAGACAATTTTTTCTGTGACCTCCTCC TAGTGATCAAGCTTGCCTGCTTAGACACCTATGGTTTTGAGATACTGGTGCTCACTAACA GTGGTCTGCTCTCACTTATGTGTTTCCTCCTTTTGCTCATTTCTGACACTATCATCCTTG CTACTGTGCATCGCCAAGCCTCTGATGGGATGTCCAAGGCCCTTTCCACTCTGTCTGCCC ACATTACTGTTGTGCTTCTCTTCTTTGGCCCATTAATATTCATCTATATTTGGCCCTTTG AAAGCTTCCCAATTGATAAATTTATCTCTGTGTTTTTTTACTGTCTTCACTCCTCTCCTT AACCCCATGATTTATACTCTGAGGAATAAAGATATAAAGGAAGCCATGAGGAAGCTAAGG AGATGACATGTGGGTTCCAAGCAGGGTTTTTAGACAACTACAAAGAAG |
| Conceptual translation |
ILIIFSSLXTSAAQIQLXGWSNKSVVTEFNLLGLSSSWELQVFFFFIFSVFYGAAVLG NILIIITVIIDSHLHSPMYFLLSNLSSIDVCQATFATPKMIADFLNEHKTTTFQGCMSQI FFLHVFGGSEMVLLVAMAYDRYIAICKPLHYMTIMNRRVXVLVGVSWAIGISHSATHLA FKVNLPFCGPNRVDNFFCDLLLVIKLACLDTYGFEILVLTNSGLLSLMCFLLLLISDTII LATVHRQASDGMSKALSTLSAHITVVLLFFGPLIFIYIWPFESFPIDKFISVFF\VFTP LLNPMIYTLRNKDIKEAMRKLRRXVGSKQGFXTTKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,425,696 | 20,425,696 | Del(1) | -/T | rs34325501 (DbSNP) | |
| 14 | 20,425,374 | 20,425,375 | Del(2) | -/CT | rs67012843 (DbSNP) | |
| 14 | 20,425,377 | 20,425,378 | Del(2) | -/TC | rs33912694 (DbSNP) | |
| 14 | 20,425,376 | 20,425,377 | In-Del(2) | -/GA | rs72519877 (DbSNP) | |
| 14 | 20,425,180 | 20,425,180 | SNP | A/G | rs4603473 (DbSNP) | |
| 14 | 20,425,171 | 20,425,171 | SNP | A/G | rs10144573 (DbSNP) | |
| 14 | 20,425,220 | 20,425,220 | SNP | A/G | rs10135235 (DbSNP) | |
| 14 | 20,424,926 | 20,424,926 | SNP | A/T | rs4456427 (DbSNP) | |
| 14 | 20,425,051 | 20,425,051 | SNP | C/T | rs10484218 (DbSNP) | |
| 14 | 19,956,767 | 19,956,767 | SNP | T/A | 1000GP (CEU, CHBJPT) | |
| 14 | 19,956,803 | 19,956,803 | SNP | C/T | 1000GP (CEU) | |
| 14 | 19,956,892 | 19,956,892 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 14 | 19,957,012 | 19,957,012 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 14 | 19,957,021 | 19,957,021 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 14 | 19,957,061 | 19,957,061 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 14 | 19,957,526 | 19,957,526 | SNP | A/G | 1000GP (CEU) | |
| 14 | 19,957,116 | 19,957,116 | SNP | A/C | 1000GP (CHBJPT) | |
| 14 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,371,142 | 20,505,020 | CopyNumber | Variation_2175 (DGV) |
| 14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 20,362,952 | 20,525,999 | CopyNumber | Variation_4827 (DGV) |
| 14 | 20,203,125 | 20,483,660 | CopyNumber | Variation_8762 (DGV) |
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,433,044 | CopyNumber | Variation_9234 (DGV) |
| 14 | 20,239,479 | 20,511,107 | CopyNumber | Variation_9235 (DGV) |
| 14 | 20,203,125 | 20,525,833 | CopyNumber | Variation_34547 (DGV) |
| 14 | 20,267,014 | 20,433,060 | CopyNumber | Variation_34563 (DGV) |
| 14 | 20,203,125 | 20,456,434 | CopyNumber | Variation_34575 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,239,246 | 20,432,988 | CopyNumber | Variation_34659 (DGV) |
| 14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
| 14 | 20,203,125 | 20,455,307 | CopyNumber | Variation_34664 (DGV) |
| 14 | 20,305,431 | 20,425,051 | CopyNumber | Variation_49302 (DGV), Variation_49303 (DGV) |
| 14 | 20,305,431 | 20,432,664 | CopyNumber | Variation_49304 (DGV) |
| 14 | 19,349,922 | 20,424,856 | CopyNumber | Variation_58655 (DGV) |
| 14 | 20,177,210 | 20,424,753 | CopyNumber | Variation_66584 (DGV) |
| 14 | 19,781,170 | 20,424,776 | CopyNumber | Variation_71833 (DGV) |
| 14 | 20,289,680 | 20,425,312 | CopyNumber | Variation_71860 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.