Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR51S1 Olfactory Receptor

Gene Symbol OR51S11 (View this gene in GeneCards)
Family 51
Subfamily S
Pseudogene No
CORP pseudogene probability score 1 (pseudogene)
Aliases OR11-24, HsOR11.3.27, ORL3325
External Ids HGNC: 15204   GeneBank: AB065796, BK004280, NM_001004758   ORDB: ORL3325   
Build #39 labels OR51S1
Chromosomal location 11:4,848,240-4,849,163 (-)
Cluster 11@5
Synteny CLIC#23
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR51G1 45.97% 298
OR51G2 46.62% 296
OR51L1 42.72% 302

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR51S1 85% 308
Chimp CONTIG465.129-1601 99% 308
Mouse Or51s1 82% 307
Rat Or51s1 81% 307
Cow OR51S1 83% 307
Cow OR51S1B 82% 307

Expression evidences

Source Accession
mRNA BC136934
GNF Atlas2 gnf1h10944_at

Sequence information

Nucleotide sequence ATGGCCCCCACCTTCTTGCTGGTGGGCATGCCAGGCCTATCAGGTGCACCCTCCTGGTGG
ACATTGCCCCTCATTGCTGTCTACCTTCTCTCTGCACTGGGAAATGGCACCATCCTCTGG
ATCATTGCCCTGCAGCCCGCCCTGCACCGCCCAATGCACTTCTTCCTCTTCTTGCTTAGT
GTGTCTGATATTGGATTGGTCACTGCCCTGATGCCCACACTGCTGGGCATCGCCCTTGCT
GGTGCTCACACTGTCCCTGCCTCAGCCTGCCTTCTACAGATGGTTTTTATCCATGTCTTT
TCTGTCATGGAGTCCTCTGTCTTGCTCGCCATGTCCATTGATCGGGCACTGGCCATCTGC
CGACCTCTCCACTACCCAGCGCTCCTCACCAATGGTGTAATTAGCAAAATCAGCCTGGCC
ATTTCTTTTCGATGCCTGGGTCTCCATCTGCCCCTGCCATTCCTGCTGGCCTACATGCCC
TACTGCCTCCCACAGGTCCTAACCCATTCTTATTGCTTGCATCCAGATGTGGCTCGTTTG
GCCTGCCCAGAAGCTTGGGGTGCAGCCTACAGCCTATTTGTGGTTCTTTCAGCCATGGGT
TTGGACCCCCTGCTTATTTTCTTCTCCTATGGCCTGATTGGCAAGGTGTTGCAAGGTGTG
GAGTCCAGAGAGGATCGCTGGAAGGCTGGTCAAACCTGTGCTGCCCACCTCTCTGCAGTG
CTCCTCTTCTATATCCCTATGATCCTCCTGGCACTGATTAACCATCCTGAGCTGCCAATC
ACTCAGCATACCCATACTCTTCTATCCTATGTCCATTTCCTTCTTCCTCCATTGATAAAC
CCTATTCTCTATAGTGTCAAGATGAAGGAGATTAGAAAGAGAATACTCAACAGGTTGCAG
CCCAGGAAGGTGGGTGGTGCTCAG
Conceptual translation MAPTFLLVGMPGLSGAPSWWTLPLIAVYLLSALGNGTILWIIALQPALHRPMHFFLFLLS
VSDIGLVTALMPTLLGIALAGAHTVPASACLLQMVFIHVFSVMESSVLLAMSIDRALAIC
RPLHYPALLTNGVISKISLAISFRCLGLHLPLPFLLAYMPYCLPQVLTHSYCLHPDVARL
ACPEAWGAAYSLFVVLSAMGLDPLLIFFSYGLIGKVLQGVESREDRWKAGQTCAAHLSAV
LLFYIPMILLALINHPELPITQHTHTLLSYVHFLLPPLINPILYSVKMKEIRKRILNRLQ
PRKVGGAQ

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 NS G/A L/F 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI)
11 100 -100 SYN G/A V/V 1000GP (YRI)
11 4,848,419 4,848,419 NS G/A L/F 1000GP (CEU, CHBJPT)
11 4,848,676 4,848,676 NS A/C L/R 1000GP (CEU, CHBJPT)
11 4,848,909 4,848,909 SYN G/A V/V 1000GP (CEU, CHBJPT)
11 4,849,031 4,849,031 NS G/C Q/E 1000GP (CEU, CHBJPT)
11 4,849,039 4,849,039 NS A/T I/N 1000GP (CEU, CHBJPT)
11 4,849,054 4,849,054 NS G/C T/S 1000GP (CEU)
11 4,849,068 4,849,068 SYN T/G A/A 1000GP (CEU, CHBJPT)
11 4,869,649 4,869,649 NS A/G F/L rs12361955 (DbSNP)
11 4,869,792 4,869,792 NS A/G L/S rs57238061 (DbSNP)
11 4,869,906 4,869,906 NS A/C L/R rs7117260 (DbSNP)
11 4,869,992 4,869,992 SYN A/G I/I rs7117389 (DbSNP)
11 4,870,139 4,870,139 SYN A/G V/V rs11602455 (DbSNP)
11 4,870,261 4,870,261 NS C/G E/Q rs11602499 (DbSNP)
11 4,870,269 4,870,269 NS A/T I/N rs12417164 (DbSNP)
11 4,870,284 4,870,284 NS C/G S/T rs35918613 (DbSNP)
11 4,870,298 4,870,298 SYN G/T A/A rs11601065 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 89 (Hasin)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

L311V L264F R241G L216S Y186C L178R L123F Q60E I57N T52S % Freq CORP
1 L L R L Y L L Q I T 53.30 0.837
2 L F R L Y R L E I T 16.51 0.837
3 L L R L Y R L Q N T 10.91 0.837
4 L F R L Y R L E I S 6.37 0.837
5 L L R L Y R L Q I T 3.92 0.837
6 L F R S Y R L Q I T 3.69 0.837
7 L F R S Y R L E I T 2.46 0.837
8 L L R L Y R F Q I T 0.84 0.337
9 L L R L Y R L E I T 0.54 0.837
10 L L R L Y L L Q N T 0.38 0.837
11 L L R L C L L Q I T 0.23 0.837
12 L L R L Y R L E I S 0.23 0.837
13 V L R L Y R L E I T 0.23 0.837
14 L L G L Y R L Q I T 0.15 0.837
15 L L R S Y L L Q I T 0.08 0.837
16 L F R L Y R L Q I T 0.08 0.837
17 L L G L Y L L Q I T 0.08 0.837

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR51S1.aApr07-unspliced main_exon 3UTR chr11 4,848,237 4,848,240 -
CDS chr11 4,848,240 4,849,163 -
5UTR chr11 4,849,163 4,849,208 -