Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR52B4 Olfactory Receptor

Gene Symbol OR52B41 (View this gene in GeneCards)
Family 52
Subfamily B
Pseudogene No
CORP pseudogene probability score 0.89 (pseudogene)
Aliases OR11-3, HsOR11.3.2, ORL3326, ORL3406
External Ids HGNC: 15209   GeneBank: AB065792, BK004256, NM_001005161   ORDB: ORL3326, ORL3406   
Build #39 labels OR52B4
Chromosomal location 11:4,367,354-4,368,295 (-)
Cluster 11@5
Synteny CLIC#23
Remarks Segregating Pseudo Gene, a polymorphism of C->del at position 119 (rs11310407)

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR52B3P 63.38% 314

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR52B4 86% 314
Chimp CONTIG465.170-13573 97% 314
Mouse Or52b4 85% 310
Rat Or52b4 77% 314
Cow OR52B4 86% 314

Expression evidences

Source Accession
ESTs BG997275
mRNA BC140928
GNF Atlas2 gnf1h05797_at

Sequence information

Nucleotide sequence ATGCCTACTGTAAACCACAGTGGCACTAGCCACACAGTCTTCCACTTGCTGGGCATCCCT
GGCCTACAGGACCAGCACATGTGGATTTCTATCCCATTCTTCATTTCCTATGTCACCGCC
CTTCTTGGGAACAGCCTGCTCATCTTCATTATCCTCACAAAGCGCAGCCTCCATGAACCC
ATGTACCTCTTCCTCTGCATGCTGGCTGGAGCAGACATTGTCCTCTCCACGTGCACCATT
CCTCAGGCCTTAGCTATCTTCTGGTTCCGTGCTGGGGACATCTCCCTGGATCGTTGCATC
ACTCAGCTCTTCTTCATCCATTCCACCTTCATCTCTGAGTCAGGGATCTTGCTGGTGATG
GCCTTTGACCACTATATTGCCATATGCTACCCACTGAGGTACACCACCATTCTTACAAAT
GCTCTGATCAAGAAAATTTGTGTGACTGTCTCTCTGAGAAGTTATGGTACAATTTTCCCT
ATCATATTTCTTTTAAAAAGATTGACTTTCTGCCAGAATAATATTATTCCACACACCTTT
TGTGAACACATTGGCCTAGCCAAATATGCATGTAATGACATTCGAATAAACATTTGGTAT
GGGTTTTCCATTCTAATGTCGACGGTGGTCTTAGATGTTGTACTAATTTTTATTTCCTAT
ATGCTGATTCTCCATGCTGTCTTCCACATGCCTTCTCCAGATGCTTGCCACAAAGCTCTC
AACACATTTGGCTCCCATGTCTGCATCATCATCCTCTTTTATGGGTCTGGCATCTTCACA
ATCCTTACCCAGAGGTTTGGACGCCACATTCCACCTTGTATCCACATCCCGTTGGCTAAT
GTCTGCATTCTGGCTCCACCTATGCTGAATCCCATTATTTATGGGATCAAAACCAAGCAA
ATCCAGGAACAGGTGGTTCAGTTTTTGTTTATAAAACAGAAA
Conceptual translation MPTVNHSGTSHTVFHLLGIPGLQDQHMWISIPFFISYVTALLGNSLLIFIILTKRSLHEP
MYLFLCMLAGADIVLSTCTIPQALAIFWFRAGDISLDRCITQLFFIHSTFISESGILLVM
AFDHYIAICYPLRYTTILTNALIKKICVTVSLRSYGTIFPIIFLLKRLTFCQNNIIPHTF
CEHIGLAKYACNDIRINIWYGFSILMSTVVLDVVLIFISYMLILHAVFHMPSPDACHKAL
NTFGSHVCIIILFYGSGIFTILTQRFGRHIPPCIHIPLANVCILAPPMLNPIIYGIKTKQ
IQEQVVQFLFIKQK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 NS A/G I/T 1000GP (YRI)
11 100 -100 SYN C/T S/S 1000GP (YRI, YRI)
11 4,367,590 4,367,590 NS A/G C/R 1000GP (CEU)
11 4,367,675 4,367,675 SYN C/T S/S 1000GP (CEU, CHBJPT)
11 4,367,979 4,367,979 NS A/G I/T 1000GP (CHBJPT)
11 4,388,879 4,388,879 NS G/A T/I rs61732898 (DbSNP)
11 4,388,905 4,388,905 SYN C/T S/S rs11031960 (DbSNP)
11 4,389,024 4,389,024 SYN G/A L/L rs61910719 (DbSNP)
11 4,389,110 4,389,110 NS A/G I/T rs11031961 (DbSNP)
11 4,389,407 4,389,407 Del(1) -/G rs11310407 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
11 4,055,945 4,510,188 CopyNumber Variation_3834 (DGV)
11 4,203,352 4,393,578 CopyNumber Variation_85620 (DGV)
11 4,238,115 4,393,578 CopyNumber Variation_75520 (DGV)
11 4,249,760 4,393,578 CopyNumber Variation_85621 (DGV)
11 4,333,543 4,474,341 CopyNumber Variation_2164 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

I216T I106T % Freq CORP
1 I I 99.00 0.884
2 T I 0.92 0.884
3 I T 0.08 0.884

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR52B4.aApr07-unspliced main_exon 3UTR chr11 4,367,351 4,367,354 -
CDS chr11 4,367,354 4,368,295 -