OR56A1 Olfactory Receptor
Gene Symbol | OR56A11 (View this gene in GeneCards) |
Family | 56 |
Subfamily | A |
Pseudogene | No |
CORP pseudogene probability score | 0.6 (pseudogene) |
Aliases | OR11-75, HsOR11.3.94, ORL3283 |
External Ids | HGNC: 14781 GeneBank: AB065821, BK004252, NM_001001917 ORDB: ORL3283 |
Build #39 labels | OR56A1 |
Chromosomal location | 11:6,026,751-6,027,692 (-) |
Cluster | 11@6 |
Synteny | CLIC#23 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR56A4 | 83.33% | 312 |
OR56A5 | 79.49% | 312 |
OR56A7P | 82.11% | 313 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR56A1B | 90% | 313 |
Mouse | Or56a3b | 77% | 312 |
Rat | Or56a5 | 76% | 312 |
Cow | OR56A4P | 81% | 312 |
Cow | OR56A4D | 81% | 312 |
Orang | OR56A4 | 84% | 312 |
Orang | OR56A7P | 86% | 300 |
Horse | OR56A4 | 80% | 312 |
Chimp | OR56A4 | 83% | 312 |
Expression evidences
Source | Accession |
---|---|
mRNA | BC136911 |
Sequence information
Nucleotide sequence |
ATGGCGTCACCCAGCAACAGCTCCACTGTCCCAGTCTCTGAATTCCTCCTCATCTGCTTC CCCAACTTCCAGAGTTGGCAGCACTGGCTCTCCCTGCCCCTCAGCCTTCTCTTCCTCCTG GCCATGGGAGCTAACACCACCCTCCTGATCACCATCCAGCTGGAGGCCTCTCTGCACCAG CCCCTGTACTACCTGCTCAGCCTCCTCTCCCTGCTGGACATCGTGCTCTGCCTCACCGTC ATCCCCAAGGTCCTGGCCATCTTCTGGTATGATCTTAGGTCGATCAGCTTCCCTGCCTGC TTCCTCCAGATGTTCATCATGAACAGTTTCCTCCCCATGGAGTCCTGCACGTTTATGGTC ATGGCCTATGACCGTTATGTGGCCATCTGCCACCCACTGCGGTACCCATCCATCATCACT AATCAATTTGTGGCCAAAGCTAGTGTCTTCATTGTGGTGCGGAATGCGCTTCTTACTGCA CCCATTCCTATCCTCACTTCCCTGCTCCATTACTGTGGGGAAAATGTCATTGAGAACTGC ATCTGTGCCAACTTGTCTGTGTCCAGGCTCTCCTGTGATAATTTCACCCTTAACAGAATC TACCAATTTGTGGCTGGTTGGACCTTGCTGGGCTCAGATTTATTCCTCATCTTCCTCTCT TACACCTTCATTCTAAGAGCTGTGCTTAGATTCAAAGCAGAGGGGGCGGCAGTGAAGGCC CTGAGCACATGTGGCTCCCACTTCATCCTCATTCTTTTCTTCAGCACCATACTGCTGGTT GTGGTGTTGACAAACGTGGCCAGAAAGAAGGTCCCCATGGACATCCTGATCCTGCTGAAC GTCCTTCATCACCTTATTCCTCCTGCATTGAACCCTATTGTGTATGGGGTTCGGACCAAA GAGATAAAACAGGGAATTCAGAAGTTACTGCAGAGAGGGAGG |
Conceptual translation |
MASPSNSSTVPVSEFLLICFPNFQSWQHWLSLPLSLLFLLAMGANTTLLITIQLEASLHQ PLYYLLSLLSLLDIVLCLTVIPKVLAIFWYDLRSISFPACFLQMFIMNSFLPMESCTFMV MAYDRYVAICHPLRYPSIITNQFVAKASVFIVVRNALLTAPIPILTSLLHYCGENVIENC ICANLSVSRLSCDNFTLNRIYQFVAGWTLLGSDLFLIFLSYTFILRAVLRFKAEGAAVKA LSTCGSHFILILFFSTILLVVVLTNVARKKVPMDILILLNVLHHLIPPALNPIVYGVRTK EIKQGIQKLLQRGR Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 6,048,400 | 6,048,399 | Ins(1) | -/T | rs72527977 (DbSNP) | |
11 | 6,048,056 | 6,048,056 | SYN | C/T | A/A | rs11040335 (DbSNP) |
11 | 6,026,826 | 6,026,826 | SYN | T/C | A/A | 1000GP (CEU) |
11 | 100 | -100 | SYN | T/C | A/A | 1000GP (YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
11 | 6,045,981 | 6,049,022 | CopyNumber | #65 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
G239A | C176F | % Freq | CORP | |
---|---|---|---|---|
1 | G | C | 99.62 | 0.633 |
2 | G | F | 0.31 | 0.633 |
3 | A | C | 0.08 | 0.633 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR56A1.aApr07-unspliced | main_exon | 3UTR | chr11 | 6,026,748 | 6,026,751 | - |
CDS | chr11 | 6,026,751 | 6,027,692 | - | ||
5UTR | chr11 | 6,027,692 | 6,027,704 | - |