OR56A3 Olfactory Receptor
Gene Symbol | OR56A31 (View this gene in GeneCards) |
Family | 56 |
Subfamily | A |
Pseudogene | No |
CORP pseudogene probability score | 0.54 (pseudogene) |
Aliases | OR11-48, OR11-59, OR11-51, HsOR11.3.90 |
External Ids | HGNC: 14786 GeneBank: BK004305, BK004554 |
Build #39 labels | OR56A6, OR56A3P |
Chromosomal location | 11:5,947,347-5,948,291 (+) |
Cluster | 11@6 |
Synteny | CLIC#23 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR56A1 | 78.32% | 309 |
OR56A4 | 75.72% | 313 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR56A3E | 86% | 314 |
Dog | OR56A3FP | 85% | 313 |
Dog | OR56A3C | 84% | 314 |
Mouse | Or56a3 | 85% | 314 |
Mouse | Or56a3b | 85% | 314 |
Rat | Or56a3b | 87% | 314 |
Cow | OR56A3G | 83% | 314 |
Cow | OR56A3IP | 81% | 313 |
Cow | OR56A3H | 81% | 314 |
Orang | OR56A1 | 77% | 314 |
Horse | OR56A1 | 76% | 309 |
Chimp | OR56A1 | 78% | 309 |
Expression evidences
Source | Accession |
---|---|
GNF Atlas2 | gnf1h10967_at |
Sequence information
Nucleotide sequence |
ATGACAACACACCGAAATGACACCCTCTCCACTGAAGCTTCAGACTTCCTCTTGAATTGT TTTGTCAGATCCCCCAGCTGGCAGCACTGGCTGTCCCTGCCCCTCAGCCTCCTTTTCCTC TTGGCCGTAGGGGCCAACACCACCCTCCTGATGACCATCTGGCTGGAGGCCTCTCTGCAC CAGCCCCTGTACTACCTGCTCAGCCTCCTCTCCCTGCTGGACATCGTGCTCTGCCTCACT GTCATCCCCAAGGTCCTGACCATCTTCTGGTTTGACCTCAGGCCCATCAGCTTCCCTGCC TGCTTCCTCCAGATGTACATCATGAATTGTTTCCTAGCCATGGAGTCTTGCACATTCATG GTCATGGCCTATGATCGTTATGTAGCCATCTGCCACCCACTGAGATATCCATCAATCATC ACTGATCACTTTGTAGTCAAGGCTGCCATGTTTATTTTGACCAGAAATGTGCTTATGACT CTGCCCATCCCCATCCTTTCAGCACAACTCCGTTATTGTGGAAGAAATGTCATTGAGAAC TGCATCTGTGCCAATATGTCTGTTTCCAGACTCTCCTGCGATGATGTCACCATCAATCAC CTTTACCAATTTGCTGGAGGCTGGACTCTGCTAGGATCTGACCTCATCCTTATCTTCCTC TCCTACACCTTCATTCTGCGAGCTGTGCTGAGACTCAAGGCAGAGGGTGCCGTGGCAAAG GCCCTAAGCACATGTGGCTCCCACTTCATGCTCATCCTCTTCTTCAGCACCATCCTTCTG GTTTTTGTCCTCACACATGTGGCTAAGAAGAAAGTCTCCCCTGATGTGCCAGTCTTGCTC AATGTTCTCCACCATGTCATTCCTGCAGCCCTTAACCCCATCATTTACGGGGTGAGAACC CAAGAAATTAAGCAGGGAATGCAGAGGTTGTTGAAGAAAGGGTGC |
Conceptual translation |
MTTHRNDTLSTEASDFLLNCFVRSPSWQHWLSLPLSLLFLLAVGANTTLLMTIWLEASLH QPLYYLLSLLSLLDIVLCLTVIPKVLTIFWFDLRPISFPACFLQMYIMNCFLAMESCTFM VMAYDRYVAICHPLRYPSIITDHFVVKAAMFILTRNVLMTLPIPILSAQLRYCGRNVIEN CICANMSVSRLSCDDVTINHLYQFAGGWTLLGSDLILIFLSYTFILRAVLRLKAEGAVAK ALSTCGSHFMLILFFSTILLVFVLTHVAKKKVSPDVPVLLNVLHHVIPAALNPIIYGVRT QEIKQGMQRLLKKGC Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 5,968,653 | 5,968,653 | Del(1) | -/G | rs34047152 (DbSNP) | |
11 | 5,968,728 | 5,968,728 | NS | T/C | M/T | rs1840178 (DbSNP) |
11 | 5,969,185 | 5,969,185 | SYN | A/G | Q/Q | rs10769378 (DbSNP) |
11 | 5,947,955 | 5,947,955 | SYN | A/G | Q/Q | 1000GP (CEU, CHBJPT) |
11 | 5,947,498 | 5,947,498 | NS | T/C | M/T | 1000GP (CEU, CHBJPT) |
11 | 100 | -100 | NS | T/C | M/T | 1000GP (YRI) |
11 | 100 | -100 | SYN | A/G | Q/Q | 1000GP (YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 5,868,055 | 6,007,613 | CopyNumber | Variation_2903 (DGV) |
11 | 5,730,377 | 5,970,717 | CopyNumber | Variation_3836 (DGV) |
11 | 5,885,711 | 5,969,185 | CopyNumber | Variation_8676 (DGV) |
11 | 5,505,764 | 6,194,475 | CopyNumber | Variation_34458 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
M51T | % Freq | CORP | |
---|---|---|---|
1 | T | 54.45 | 0.558 |
2 | M | 45.55 | 0.558 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR56A3.aApr07-unspliced | main_exon | CDS | chr11 | 5,947,347 | 5,948,291 | + |
3UTR | chr11 | 5,948,291 | 5,948,294 | + |