Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR56B2P Olfactory Receptor

Gene Symbol OR56B2P1 (View this gene in GeneCards)
Family 56
Subfamily B
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-63, HsOR11.3.79
External Ids HGNC: 15246   GeneBank: AB065814, BK004384, NG_004326   
Build #39 labels OR56B2
Chromosomal location 11:5,765,162-5,766,046 (+)
Cluster 11@6
Synteny CLIC#23
Remarks Coding for partial protein

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR56B1 73.29% 292
OR56B3P 65.31% 294
OR56B4 68.37% 294

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR56B2 86% 294
Dog OR56B2C 85% 295
Dog OR56B2D 84% 295
Chimp CONTIG*********** 95% 258
Mouse Or56b2 82% 295
Rat Or56b2 84% 295
Rat Or56b2b 80% 295
Cow OR56B2P 85% 296
Cow OR56B2C 83% 295
Cow OR56B2E 84% 287
Cow OR56B2FP 83% 296

Expression evidences

Source Accession
GNF Atlas2 gnf1h10912_at

Sequence information

Nucleotide sequence ATGGGATTCCCTGGCATTCACAGTTGGCAGCACTGGCTCTCCCTGCCCCTGGCTCTGCTC
TACCTCTTAGCTCTCAGTGCCAACATCCTTATCCTGATCATCATCAACAAAGAGGCAGCA
CTGCACCAGCCTATGTACTATTTCCTGGGCATCTTGGCTATGGCAGACATAGGCCTGGCT
ACCACCATCATGCCTAAGATTTTGGCCATCTTATGGTTCAATGCTAAGACCATCAGTCTC
CTGGAGTGCTTTGCTCAGATGTATGCCATACATTGCTTTGTGGCCATGGAATCAAGTACC
TTTGTCTGCATGGCTATTGATAGATATGTAGCCATTTGTCGACCGCTACGATATCCATCA
ATCATCACTGAATCTTTTGTTTTCAAAGCAAACGGGTTCATGGCACTGAGAAACAGCCTG
TGTCTCATCTCAGTGCCTCTGTTGGCTGCCCAGAGGCATTACTGCTCCCAGAATCAAATT
GAGCACTGTCTTTGTTCTAACCTTGGAGTCACTAGCCTATCTTGTGATGATCGAAGAATC
AATAGCATTAACCAGGTCCTTTTGGCTTGGACACTCATGGGAAGTGACCTGGGTTTGATT
ATTTTATCATATGCTCTAATACTTTACTCTGTCCTGAAGCTGAACTCTCCAGAAGCTGCA
TCCAAGGCCTTAAGTACCTGCACCTCCCACCTCATCTTAATCCTTTTCTTCTACACAGTC
ATCATTGTGATTTCCATTACTCGTAGTACAGGAATGAGAGTTCCCCTTATTCCAGTTCTA
CTTAATGTGCTACACAATGTCATTCCCCCTGCCCTGAACCCCATGGTATATGCACTCAAG
AACAAGGAACTCAGGCAAGGCTTATACAAGGTACTTAGACTGGAG
Conceptual translation MGFPGIHSWQHWLSLPLALLYLLALSANILILIIINKEAALHQPMYYFLGILAMADIGLA
TTIMPKILAILWFNAKTISLLECFAQMYAIHCFVAMESSTFVCMAIDRYVAICRPLRYPS
IITESFVFKANGFMALRNSLCLISVPLLAAQRHYCSQNQIEHCLCSNLGVTSLSCDDRRI
NSINQVLLAWTLMGSDLGLIILSYALILYSVLKLNSPEAASKALSTCTSHLILILFFYTV
IIVISITRSTGMRVPLIPVLLNVLHNVIPPALNPMVYALKNKELRQGLYKVLRLE

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 5,787,042 5,787,041 Ins(1) -/C rs34466274 (DbSNP)
11 5,786,427 5,786,427 SNP A/G rs73408147 (DbSNP)
11 5,786,551 5,786,551 SNP A/G rs73408149 (DbSNP)
11 5,787,134 5,787,134 SNP A/G rs10838615 (DbSNP)
11 5,786,746 5,786,746 SNP C/T rs73408152 (DbSNP)
11 5,786,784 5,786,784 SNP C/T rs7104920 (DbSNP)
11 5,765,554 5,765,554 SNP C/T 1000GP (CEU, CHBJPT)
11 5,765,904 5,765,904 SNP G/A 1000GP (CEU, CHBJPT)
11 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 5,782,093 5,812,233 CopyNumber Variation_0414 (DGV), Variation_34987 (DGV)
11 5,776,623 5,842,356 CopyNumber Variation_2902 (DGV)
11 5,730,377 5,970,717 CopyNumber Variation_3836 (DGV)
11 5,784,484 5,809,387 CopyNumber Variation_6926 (DGV)
11 5,783,884 5,810,228 CopyNumber Variation_23218 (DGV)
11 5,784,904 5,809,056 CopyNumber Variation_30540 (DGV)
11 5,505,764 6,194,475 CopyNumber Variation_34458 (DGV)
11 5,783,630 5,809,284 CopyNumber Variation_37479 (DGV)
11 5,784,575 5,809,283 CopyNumber Variation_41250 (DGV)
11 5,784,556 5,809,291 CopyNumber Variation_43822 (DGV)
11 5,777,210 5,805,515 CopyNumber Variation_48854 (DGV)
11 5,784,695 5,809,362 CopyNumber Variation_58525 (DGV)
11 5,784,859 5,809,285 CopyNumber Variation_65851 (DGV)
11 5,782,017 5,809,657 CopyNumber Variation_75531 (DGV), Variation_85631 (DGV)
11 5,783,842 5,809,435 CopyNumber Variation_101118 (DGV)
Deletion 245 (Hasin)
11 5,786,292 5,789,276 Deletion #13 (Waszak)
11 5,784,438 5,809,353 Del(-24708) #14(modil)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.