OR5AC1P Olfactory Receptor
| Gene Symbol | OR5AC1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | AC |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR3-2, HsOR3.3.1P, ORL3108 |
| External Ids | HGNC: 15047 GeneBank: AB065456, BK004740, NG_004267 ORDB: ORL3108 |
| Build #39 labels | OR5AC1P |
| Chromosomal location | 3:98,064,472-98,065,393 (+) |
| Cluster | 3@98 |
| Synteny | CLIC#9 |
| Remarks | Segregating Pseudo Gene, a polymorphism of T->del at position 258 (rs5851098) |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5AC2 | 72.96% | 307 |
| OR5AC4P | 75.74% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5AC1 | 84% | 307 |
| Mouse | Or5ac16 | 78% | 306 |
| Rat | Or5ac16 | 77% | 306 |
| Cow | OR5AC1 | 81% | 307 |
| Orang | OR5AC1 | 96% | 307 |
| Horse | OR5AC32 | 79% | 307 |
| Chimp | OR5AC1 | 97% | 307 |
Sequence information
| Nucleotide sequence |
ATGGCAGAAGAAAATAAGATTCTGGTGACTCACTTTGTCCTCACAGGACTCACAGATCAT CCAGGGCTGCAGGCGCCCCTGTTCCTGGTGTTCTTGGTCATCTACCTCATCACCCTGGTG GGCAACCTTGGCCTGATGGCTCTCATCTGGAAGGACCCCCACCTTCACACCCCCATATAC TTATTTCTTGGCAGTTTAGCCTTTGCAGATGCATGCACTTCATCCTCTGTAACTTCTAAG ATGCTTATCAATTTTTTTATCAAAGAATCATATGCTATCCATGGCTAAGTGTGCCACCCA GTTTTACTTTTTTGGTTCCAATGCAACCACAGAATGCTTCCTGCTGGTAGTGATGGCCTA TGACCGCTATGTAGCCATATGCAATCCCTTGCTTTATCCAGTGGTGATGTCCAATAGCCT CTGTACTCAGTTTATAGGTATTTCATATTTTATTGGTTTTCTGCATTCAGCGATTCATGT GGGTTTGTTATTTAGATTAACTTTCTGCAGGTCCAATATTATACATTATTTCTACTGTGA AATTTTACAGCTGTTCAAAATTTCTTGCACCAATCCTACAGTTAATATACTTCTGATTTT CATCTTTTCAGCATTTATACAAGTCTTCACTTTTATGACTCTTATCGTCTCTTACTCCTA TATTCTCTCTGCCATCCTGAAAAAGAAGTCTGAGAAGGGTAGAAGCAAAGCCTTCTCTAC TTGCAGTGCCCATCTGCTCTCTGTCTCTTTGTTCTACGGCACCCTCTTCTTCATGTATGT GAGTTCTAGGTCTGGATCAGCTGCAGATCAGGCCAAAATGTATTCTTTATTTTACACAAT AATAATTCCTTTACTAAATCCTTTTATTTACAGCCTAAGGAACAAAGAGGTTATAGATGC CCTGAGAAGAATCATGAAGAAA |
| Conceptual translation |
MAEENKILVTHFVLTGLTDHPGLQAPLFLVFLVIYLITLVGNLGLMALIWKDPHLHTPIY LFLGSLAFADACTSSSVTSKMLINF\SKNHMLSMAKCATQFYFFGSNATTECFLLVVMA YDRYVAICNPLLYPVVMSNSLCTQFIGISYFIGFLHSAIHVGLLFRLTFCRSNIIHYFYC EILQLFKISCTNPTVNILLIFIFSAFIQVFTFMTLIVSYSYILSAILKKKSEKGRSKAFS TCSAHLLSVSLFYGTLFFMYVSSRSGSAADQAKMYSLFYTIIIPLLNPFIYSLRNKEVID ALRRIMKK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 3 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 3 | 97,783,335 | 97,783,335 | SNP | C/T | rs1388646 (DbSNP) | |
| 3 | 97,783,336 | 97,783,336 | Del(1) | -/T | rs35685535 (DbSNP) | |
| 3 | 97,783,546 | 97,783,546 | SNP | A/G | rs1873627 (DbSNP) | |
| 3 | 97,783,567 | 97,783,567 | Del(1) | -/T | rs5851097 (DbSNP) | |
| 3 | 97,783,572 | 97,783,572 | Del(1) | -/T | rs72583200 (DbSNP) | |
| 3 | 97,783,573 | 97,783,573 | rescued_Del(-1) | -/T | rs5851098 (DbSNP) | |
| 3 | 97,783,715 | 97,783,714 | Ins(1) | -/C | rs34436437 (DbSNP) | |
| 3 | 97,783,851 | 97,783,851 | SNP | T/C | rs2316681 (DbSNP) | |
| 3 | 97,783,852 | 97,783,852 | SNP | T/G | rs2316680 (DbSNP) | |
| 3 | 97,784,072 | 97,784,072 | SNP | C/T | rs1492039 (DbSNP) | |
| 3 | 97,784,098 | 97,784,098 | In-Del(1) | -/A | rs11328990 (DbSNP) | |
| 3 | 97,784,175 | 97,784,175 | SNP | A/C | rs1352891 (DbSNP) | |
| 3 | 98,064,491 | 98,064,491 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,064,702 | 98,064,702 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 3 | 98,064,836 | 98,064,836 | SNP | C/T | 1000GP (CEU) | |
| 3 | 98,065,007 | 98,065,007 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 3 | 98,065,008 | 98,065,008 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,065,228 | 98,065,228 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 3 | 98,065,331 | 98,065,331 | SNP | C/A | 1000GP (CEU, CHBJPT) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.