OR5B15P Olfactory Receptor
| Gene Symbol | OR5B15P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | B |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-238, HsOR11.12.19P, ORL3619 |
| External Ids | HGNC: 15265 GeneBank: BK004718, NG_004206 ORDB: ORL3619 |
| Build #39 labels | OR5B15P |
| Chromosomal location | 11:58,387,571-58,388,486 (-) |
| Cluster | 11@58 |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5B17 | 62.83% | 304 |
| OR5B1P | 61.33% | 300 |
| OR5B2 | 61.49% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5B31 | 65% | 309 |
| Mouse | Or5b113 | 60% | 304 |
| Rat | Or5b114 | 59% | 305 |
| Cow | OR5B140 | 65% | 314 |
| Orang | OR5B17 | 61% | 307 |
| Horse | OR5B159 | 63% | 309 |
| Chimp | OR5B17 | 63% | 309 |
Sequence information
| Nucleotide sequence |
TCTCAAACCACATCTATAGATGATAATACAGAGGTAAATGAATTCATATGACTAGGACTA ACCAAAGCCCCAGAACTACAGGTCCACCTCTTTGTCTTATTTAACTTCATCTACCTCTTC ACTCTGAGTGGGAACCTGGGGATGATGCTGCTGATCCTGCTGGACTCTCGTCTCCACACT TCCATGTACTTTTTCCTCAGTAACCTGTCTCTGGTGGACTTTTGCTACTCAGAAACTGTC ACTCCAAAGATGATGGCTGGGTTGCTGATAGCTCACAAGGTCATCTCCTACAATGTATGT GCTGCTCAGATGTTCTTTTTTGCAGTCTTTGCTACTGTGGAAAGTTACTTCTTGACTTCA GTGGCCTATGATTGCTACAGAGTAATGTGTAAACCCCTACATTACACCACCACCATGACA ACAAATGTGTGTGCTTCTCTGGCCATACATGCATGTCTTAGGTTTACTGACTGCTGCTGT TGACATTGGAGACATTTTATGTCCAATGAGATCCATCACTTTTTCTGTGATATTCTGGCA GTCATGACTCTGACTTGCTCTAATAAACATATTAATGAGTTGATCCTTGTTCCTACTTCA AGCTATATTTTTTACCCTCCTAGTTATCTTGATTTCCTGCTTGTTTGTATTTGTATTTGT CACCATTTTAAAGATGCTCTCTTTAAGTATACAAGAAGGTTTTATCTACCTATGGTTCTC ACCTCACTGCAGTTCCTTTATTTTATGAGACTGTCCTCATCACATATGTGCAGCCAAGTT CTATCATTTCATGAACACAGAAAAAATTGTATCTGTGTTTCATATTATGGTTATCCCCAT GCTAATCCCTGTGGTTTATAGCCTGAGAAACAACGAGGTCAAGAGTGCATTCAAGACTGT TTGTTGAGGAAACAAA |
| Conceptual translation |
SQTTSIDDNTEVNEFIXGLTKAPELQVHLFVLFNFIYLFTLSGNLGMMLLILLDSRLHT SMYFFLSNLSLVDFCYSETVTPKMMAGLLIAHKVISYNVCAAQMFFFAVFATVESYFLTS VAYDCYRVMCKPLHYTTTMTTNVCASLAIHA\LGLLTAAVDIGDI/MSNEIHHFFCDI LAVMTLTCSNKHINELIL\LLQAIFFTLLVILISCLFVFVFVTILKMLS/KYT/KVL STYGSHLTAVPLFYETVLITYVQPSS/HFMNTEKIVSVFHIMVIPMLIPVVYSLRNNEV KSAFKTVCXNK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 11 | 58,155,049 | 58,155,049 | SNP | C/T | rs7934419 (DbSNP) | |
| 11 | 58,155,086 | 58,155,086 | SNP | A/G | rs10792166 (DbSNP) | |
| 11 | 58,155,500 | 58,155,499 | Ins(1) | -/T | rs34347092 (DbSNP) | |
| 11 | 58,155,512 | 58,155,512 | SNP | A/G | rs35769608 (DbSNP) | |
| 11 | 58,155,716 | 58,155,716 | SNP | A/G | rs73485922 (DbSNP) | |
| 11 | 58,155,809 | 58,155,809 | SNP | A/G | rs10792167 (DbSNP) | |
| 11 | 58,155,907 | 58,155,907 | SNP | A/G | rs73485926 (DbSNP) | |
| 11 | 58,387,576 | 58,387,576 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 58,387,613 | 58,387,613 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 58,388,039 | 58,388,039 | SNP | G/A | 1000GP (CEU) | |
| 11 | 58,388,336 | 58,388,336 | SNP | G/A | 1000GP (CEU, CHBJPT) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 173 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.