OR5BB1P Olfactory Receptor
| Gene Symbol | OR5BB1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | BB |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-247, HsOR11.13.4P, ORL3564 |
| External Ids | HGNC: 15271 GeneBank: AB065532, BK004569, NG_004203 ORDB: ORL3564 |
| Build #39 labels | OR5BB1P |
| Chromosomal location | 11:59,391,353-59,392,291 (-) |
| Cluster | 11@59a |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5A1 | 58% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5A1 | 59% | 299 |
| Mouse | Or5bb10 | 75% | 309 |
| Rat | Or5bb12 | 72% | 307 |
| Cow | OR5A1 | 57% | 300 |
| Orang | OR5AN2 | 54% | 304 |
| Horse | OR5BB18 | 78% | 312 |
| Chimp | OR5A1 | 57% | 300 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AB529231 |
Sequence information
| Nucleotide sequence |
ATGGAAGTGAGTGGGAACCACACCTCTGTGGCCATGTTTGTTCTCCTAGGACTCTCAGAT GAAAAAGAGCTGCAGCTCATCCTCTTTCCAGTCTTCCTGGTGATCTACCTTGTGACCCTG ATTTGGAACATGGGTCTTATCATCCTCATCAGAATAGACTCTCATCTGAACACACCCATG TACTTTTTTCTCAGTTTCCTCTCATTTACAGACATCTGCTATTCTTCTACCATCAGCCCA AGGATGCTTTCAGACTTCTTAAAAGATAAGAAGACAATTTCCTTCCTTGCCTGTGCCACT CAGTATTTTCTTGGGGCCTGGATGAGTCTGGCTGAGTGCTGCCTCTTGGTCATCATGGCC TGTGACAGATATGTGGCCATTGGCAGCCCCCTGCAGTACTCAGCAATCATGGTCCCTAGT ATCTGTTGGAAGATGGTAGCTGGAGTCTGTGGGGGTGGATTCCTTAGTAGCTTAGTTCAT ACAGTCCCTTGCTTTAATCTCTACTACTGTGGGCCAAATATCATTCAACATTTCTTCTGT AACACACTTCAGATTATTTCCTTGTCTTGCTCCAACCCCTTTATCAGCCAAATGATTCTT TTTCTGGAAGCTATTTTTGTTGGGTTGGGCTCTTTGCTTGTTATCCTTTTGTCTTATGGT TTCATTGTAGCTTCCATACTGAAAATATCATCAACCAAATGTTGTGCCAAGGCCTTCAAT ACCTGTGCCTCCCACCTGGCAGCTGTGGCTCTCTTCTATGGCACAGCCCTTTCTGTGTAC ATGCATCCTAGCTCTAGCCACTCCATGAAGTAGGACAAGGTGCTCTCAGTGTTCTATGTT ATACTTATCCCCATGTTAAACACTCTGATCTATAGTTTGAGGAACAAGGAAATCAAAGAG GCCCTCAAGAGGGTGACAAATGGAGCAACATATTTACAT |
| Conceptual translation |
MEVSGNHTSVAMFVLLGLSDEKELQLILFPVFLVIYLVTLIWNMGLIILIRIDSHLNTPM YFFLSFLSFTDICYSSTISPRMLSDFLKDKKTISFLACATQYFLGAWMSLAECCLLVIMA CDRYVAIGSPLQYSAIMVPSICWKMVAGVCGGGFLSSLVHTVPCFNLYYCGPNIIQHFFC NTLQIISLSCSNPFISQMILFLEAIFVGLGSLLVILLSYGFIVASILKISSTKCCAKAFN TCASHLAAVALFYGTALSVYMHPSSSHSMKXKVLSVFYVILIPMLNTLIYSLRNKEIKE ALKRVTNGATYLH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,159,761 | 59,159,760 | Ins(1) | -/C | rs34665388 (DbSNP) | |
| 11 | 59,159,600 | 59,159,600 | SNP | G/A | rs2219071 (DbSNP) | |
| 11 | 59,392,127 | 59,392,127 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 59,392,275 | 59,392,275 | SNP | T/C | 1000GP (CEU) | |
| 11 | 59,391,523 | 59,391,523 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.