OR5BH1P Olfactory Receptor
Gene Symbol | OR5BH1P1 (View this gene in GeneCards) |
Family | 5 |
Subfamily | BH |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsORX.1.3P, ORL4079 |
External Ids | HGNC: 15407 GeneBank: NG_004157 ORDB: ORL4079 |
Build #39 labels | OR5BH1P, OR5BH2P |
Chromosomal location | X:131,398,049-131,398,957 (-) |
Cluster | X@131a |
Synteny | CLIC#48 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR5F1 | 46.64% | 298 |
OR5F2P | 46.15% | 299 |
OR5G1P | 49.67% | 300 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR5BH3 | 76% | 303 |
Mouse | Or5bh3 | 74% | 300 |
Rat | Or5bh3 | 74% | 300 |
Cow | OR5BH4P | 67% | 302 |
Orang | OR5G1 | 50% | 298 |
Horse | OR5BH5 | 76% | 303 |
Chimp | OR5G1 | 50% | 300 |
Expression evidences
Source | Accession |
---|---|
ESTs | BE152503 |
Sequence information
Nucleotide sequence |
ATGGTGACTGACTTCATCTTTCTCGGCATGACAGATAACTCTCAGCTTGAAGTCCTGCTA TTTGGAGTCTTTCTTATTGCTTACATCATCACTGTGTTGGAGAATCTAGGCCTTGTGGTT CTGATCAGAGTCAGCTCCCGCCTCCACACCCCATGTACTTTTTCCTCTCTAATCAGTCCT TCCTTGATGTCTGTTTCTCTTCCATTACAATTCCACAGAATTTAGCACATTTGTTTTCTA AGCTGCAGTATGTTTCTTTCCTTTTCCCGTATAACTTAAATGAGCTTGTTTGTAATCTTT GCCTCTGCTGAATGCAATTTTTTAAACTTGCATGGCCTATGACCGCTTTACTGCCATCTG TCACCCACTGTTCTACCACATTACCATGTCAAGAGGCCATTATCTTTTCTTGGTAGCAGG ATGCTACCTTGGTGGGTTAGTTAAGATGGTCACTGTGACAACTTCCATCACACAACTATC GCTTTGTCAACCATGTGTCCTCCCTGCCTTCTTCTGTGACATTCCCTCATTGTTGGTACT GGTTTGCTCAGATCCTTGGATCACCTCCCGATCTTGGTGGTTGGCTGTGGGGGATTCACC CTGGTCACCTCTGTTGTGGTGATCCTTGTCTCCTACATGTCTTCCCTCATGACTATCCTA GGAATTCCCTTAGCTTCTGGAAAACAGAGAGCCTTCTCCACCTGTGCCTCCCACTTGACT GCTGTTAGCCTGTACTATGAAACAACTATGTACACTTACTTGCCCGCCTCGCGACATGGA TCCGGGGCAGGAAATCAGATTGTGTCAGTATTTTATACAATGGTGATCCCCATGTTAAAT CCTCTCATCTATAGTTTGAGAAATGAGGAAGTGAAAGTTGCCCTATGAAAAACATTGAGA CATAGTCCT |
Conceptual translation |
MVTDFIFLGMTDNSQLEVLLFGVFLIAYIITVLENLGLVVLIRVSSRLH/PMYFFLSNQ SFLDVCFSSITIPQNLAHLFSKLQYVSFL\RITXSLFVIFASAECNFL\CMAYDRFT AICHPLFYHITMSRGHYLFLVAGCYLGGLVKMVTVTTSITQLSLCQPCVLPAFFCDIPSL LVLVCSD/LDHLPILVVGCGGFTLVTSVVVILVSYMSSLMTILGIPLASGKQRAFSTCA SHLTAVSLYYETTMYTYLPASRHGSGAGNQIVSVFYTMVIPMLNPLIYSLRNEEVKVALXbr/>KTLRHSP Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
X | 130,532,111 | 130,532,111 | SNP | A/G | rs2503369 (DbSNP) | |
X | 130,532,236 | 130,532,236 | SNP | C/G | rs2503370 (DbSNP) | |
X | 130,532,530 | 130,532,530 | SNP | C/T | rs2475424 (DbSNP) | |
X | 130,532,704 | 130,532,704 | SNP | G/T | rs2475425 (DbSNP) | |
X | 130,532,824 | 130,532,824 | SNP | C/T | rs17000490 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 144 (Hasin) | |||
X | 130,530,023 | 130,533,031 | Deletion | #318 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.