OR5M1 Olfactory Receptor
| Gene Symbol | OR5M11 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | M |
| Pseudogene | No |
| CORP pseudogene probability score | 0.05 (functional) |
| Aliases | OR11-208, OST050, HsOR11.11.79, ORL3400 |
| External Ids | HGNC: 8352 GeneBank: AB065742, AF399522, BK004402, NM_001004740 ORDB: ORL3400 |
| Build #39 labels | OR5M1 |
| Chromosomal location | 11:56,612,558-56,613,502 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5M10 | 95.56% | 315 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR5M10 | 86% | 315 |
| Dog | OR5M10C | 86% | 315 |
| Chimp | CONTIG*********** | 99% | 315 |
| Chimp | CONTIG*********** | 95% | 315 |
| Mouse | Or5m10 | 83% | 307 |
| Mouse | Or5m10b | 80% | 315 |
| Rat | Or5m10 | 84% | 304 |
| Rat | Or5m10b | 82% | 315 |
| Cow | OR5M10 | 84% | 306 |
| Cow | OR5M10C | 84% | 306 |
Sequence information
| Nucleotide sequence |
ATGTTCTCCCCAAACCACACCATAGTGACAGAATTCATTCTCTTGGGACTGACAGACGAC CCAGTGCTAGAGAAGATCCTGTTTGGGGTATTCCTTGCGATCTACCTAATCACACTGGCA GGCAACCTGTGCATGATCCTGCTGATCAGGACCAATTCCCACCTGCAAACACCCATGTAT TTCTTCCTTGGCCACCTCTCCTTTGTAGACATTTGCTATTCTTCCAATGTTACTCCAAAT ATGCTGCACAATTTCCTCTCAGAACAGAAGACCATCTCCTACGCTGGATGCTTCACACAG TGTCTTCTCTTCATCGCCCTGGTGATCACTGAGTTTTACATCCTTGCTTCAATGGCATTG GATCGCTATGTAGCCATTTGCAGCCCTTTGCATTACAGTTCCAGGATGTCCAAGAACATC TGTGTCTGTCTGGTCACTATCCCTTACATGTATGGGTTTCTTAGTGGGTTCTCTCAGTCA CTGCTAACCTTTCACTTATCCTTCTGTGGCTCCCTTGAAATCAATCATTTCTACTGCGCT GATCCTCCTCTTATCATGCTGGCCTGCTCTGACACCCGTGTCAAAAAGATGGCAATGTTT GTAGTTGCAGGCTTTAATCTCTCAAGCTCTCTCTTCATCATTCTTCTGTCCTATCTTTTC ATTTTTGCAGCGATCTTCAGGATCCGTTCTGCTGAAGGCAGGCACAAAGCCTTTTCTACG TGTGCTTCCCACCTGACAATAGTCACTTTGTTTTATGGAACCCTCTTCTGCATGTACGTA AGGCCTCCATCAGAGAAGTCTGTAGAGGAGTCCAAAATAACTGCAGTCTTTTATACTTTT TTGAGCCCAATGCTGAACCCATTGATCTATAGCCTACGGAACACAGATGTAATCCTTGCC ATGCAACAAATGATTAGGGGAAAATCCTTTCATAAAATTGCAGTT |
| Conceptual translation |
MFSPNHTIVTEFILLGLTDDPVLEKILFGVFLAIYLITLAGNLCMILLIRTNSHLQTPMY FFLGHLSFVDICYSSNVTPNMLHNFLSEQKTISYAGCFTQCLLFIALVITEFYILASMAL DRYVAICSPLHYSSRMSKNICVCLVTIPYMYGFLSGFSQSLLTFHLSFCGSLEINHFYCA DPPLIMLACSDTRVKKMAMFVVAGFNLSSSLFIILLSYLFIFAAIFRIRSAEGRHKAFST CASHLTIVTLFYGTLFCMYVRPPSEKSVEESKITAVFYTFLSPMLNPLIYSLRNTDVILA MQQMIRGKSFHKIAV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | NS | A/T | L/Q | 1000GP (YRI) |
| 11 | 56,380,134 | 56,380,134 | NS | C/G | S/T | rs4939078 (DbSNP) |
| 11 | 56,380,547 | 56,380,550 | Del(4) | -/CAGA | rs72003051 (DbSNP) | |
| 11 | 56,380,553 | 56,380,556 | Del(4) | -/GACA | rs71931749 (DbSNP) | |
| 11 | 56,613,341 | 56,613,341 | NS | G/T | H/Q | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 130 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| S282T | L17Q | S3F | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | S | L | S | 61.83 | 0.098 |
| 2 | T | L | S | 36.64 | 0.098 |
| 3 | S | L | F | 0.92 | 0.098 |
| 4 | S | Q | S | 0.61 | 0.098 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR5M1.aApr07-unspliced | main_exon | 3UTR | chr11 | 56,612,555 | 56,612,558 | - |
| CDS | chr11 | 56,612,558 | 56,613,502 | - | ||