Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5P1P Olfactory Receptor

Gene Symbol OR5P1P1 (View this gene in GeneCards)
Family 5
Subfamily P
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-92, PJCG1, HsOR11.5.3P, ORL3490
External Ids HGNC: 14779   GeneBank: AB065514, AF220493, AF399365, BK004689, NG_004139   ORDB: ORL3490   
Build #39 labels OR5P1P
Chromosomal location 11:7,772,893-7,773,814 (-)
Cluster 11@8
Synteny CLIC#25
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5P3 70.74% 311

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5P5 70% 307
Mouse Or5p1 81% 310
Rat Or5p1 80% 310
Cow OR5P1 80% 310
Orang OR5P3 70% 311
Horse OR5P1B 81% 308
Horse OR5P1 81% 308
Chimp OR5P3 70% 311

Expression evidences

Source Accession
mRNA AB529258

Sequence information

Nucleotide sequence ATGGAGATTGGAAACCATACCACAGTGACAGAGTTTATTATTTTGGGGTTAACTGAGGAT
CCTACACTTTGTGACATCTTCTTTGTGATATTTCTAGGAATCTACATTGTCACCTTAATA
GGCAATATCAGCATAATAAAGAAGCTGTTCCCAACTTCACACTCCCATGTACCTGTTCCT
CAGCCACTTGGCTTTTGTGGACATAGGGCTTGCCACAGTAGTCACACCTATAATGCTTAT
GGGATTCCTAAGACGTGGAACAGCCCTCCCTGTCACTAGCTGTGAAGCCCAGCTCTGTTC
TGTAGTCATGTTTGGGACGTCTGAATGCTTCCTACTGGCGACCATGGCCTATGATCGCTA
TGTGGCCATCTGCTCACCCCTGGTGAACTCCACCCACTTGTCCCCCATAATCTGCATACT
CTTAGTGGGGGTTTGCTACCTGGGTGGATGTGTGAATGCCTCAACATTTACTAGTTGTTT
ATTGAGTCTGTCTTTCTGTGGACCAAATCAGATAGATCATTTTTTCTGTGATTTCTCTCC
TTTGTTGAAACTTTCCTGCTCAAATATCTCCATTCCTGAAATTATCCCTTCCATCTCTTC
TGGATCTATCATTGTGGTCACAGTATTTGCCATAGCCATCTCCTACATCTACATCCTCAT
CACCATCCTGAAGATGCGCTCCGCCGAGGGGCGCCACAAGGCCTTCTCCACCTGTACCTC
CCACCTCGCTGCGGTTACTCTCTACTATGGAACGATTACCTTCATTTATGTGATGCCCAA
ATCCAGTTACTCAACTAGCCAGAACAGATTGATATCGCTGTCCTACACAGTGGTAATCCC
CATACTGAACCCCTTTATCTATAGTCTGAGGAACAGAGATGTAAAGGAGGCACTAAGAAA
GGCAACTGTCAGAATATATTCT
Conceptual translation MEIGNHTTVTEFIILGLTEDPTLCDIFFVIFLGIYIVTLIGNISIIKK\SQLHTPMYLF
LSHLAFVDIGLATVVTPIMLMGFLRRGTALPVTSCEAQLCSVVMFGTSECFLLATMAYDR
YVAICSPLVNSTHLSPIICILLVGVCYLGGCVNASTFTSCLLSLSFCGPNQIDHFFCDFS
PLLKLSCSNISIPEIIPSISSGSIIVVTVFAIAISYIYILITILKMRSAEGRHKAFSTCT
SHLAAVTLYYGTITFIYVMPKSSYSTSQNRLISLSYTVVIPILNPFIYSLRNRDVKEALR
KATVRIYS

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 SNP C/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)
11 7,772,998 7,772,998 SNP C/A 1000GP (CEU, CHBJPT)
11 7,773,039 7,773,039 SNP G/T 1000GP (CEU, CHBJPT)
11 7,773,103 7,773,103 SNP G/C 1000GP (CEU, CHBJPT)
11 7,773,177 7,773,177 SNP T/C 1000GP (CEU)
11 7,773,429 7,773,429 SNP T/A 1000GP (CEU, CHBJPT)
11 7,773,433 7,773,433 SNP C/G 1000GP (CEU, CHBJPT)
11 7,794,517 7,794,517 SNP G/A rs61743345 (DbSNP)
11 7,794,545 7,794,545 SNP A/C rs1482784 (DbSNP)
11 7,794,553 7,794,553 SNP G/A rs61743353 (DbSNP)
11 7,794,586 7,794,586 SNP G/T rs12271325 (DbSNP)
11 7,794,650 7,794,650 SNP C/G rs371799 (DbSNP)
11 7,794,659 7,794,659 SNP A/G rs383598 (DbSNP)
11 7,794,677 7,794,677 SNP G/T rs397963 (DbSNP)
11 7,794,724 7,794,724 SNP C/T rs12293183 (DbSNP)
11 7,794,773 7,794,773 SNP A/T rs61739065 (DbSNP)
11 7,794,976 7,794,976 SNP A/T rs980145 (DbSNP)
11 7,794,980 7,794,980 SNP C/G rs12285181 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
11 7,785,603 7,838,917 CopyNumber Variation_35016 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR5P1P.aApr07-unspliced main_exon CDS_partial chr11 7,772,962 7,773,471 -