OR5S1P Olfactory Receptor
| Gene Symbol | OR5S1P1 (View this gene in GeneCards) |
| Family | 5 |
| Subfamily | S |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR2.4.3P, ORL3090 |
| External Ids | HGNC: 15040 GeneBank: NG_004369 ORDB: ORL3090 |
| Build #39 labels | OR5S1P |
| Chromosomal location | 2:240,109,102-240,110,049 (+) |
| Cluster | 2@241 |
| Synteny | CLIC#7 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9H1P | 46.33% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|
Sequence information
| Nucleotide sequence |
ATGTCAACCCACAGAAATGGAAATCTCTCAGTGGTTCCTTTGTGGGAGAGCATGCTGAAG GGACTTGAGGGTGGCCTGGAGAACCAGGCCCTGCTCTTTGCTGTGTTCCCAGGTCTATAC ATGGTGACCATCCCGGGAAACCTCACCATGACCATGGTCATCATCCTGGACACGCACCTG CACTTCCCAGTGAACTTCTTCCTCAGGAGCCTCCCCCTTCCTGGACCTTGGCCATGCCTC CATCACCCCAATGCCCTGGTTAACTTCTCTTCCTCGTCCAAGGTCGTCACCTTTGCAGGC TGTGCTGCCCGGTTCTTTTTCTCCTTGCTGTCTACCACTGAGACTTTCCTGCTGGCCGTG ATGGCCTATGACTGCTTCGTGGCCATCTGTAGTCTGGTGTGGTGCCCAGTGACCACGTGC CTCTCGATCTGCATCATCCTGGGACCAGGCACCTACTGCAGGGTCTGCCTCAGCTCCATC GTGCAGACCGGCCTCATGTTCCAGCTCCCTTCTGCAGGGACCAACCACATTGACCACTCT GTGACATGCCCCAGCTGCTCCGGCTGGCCTGTGCATGCCTGGCCCTCAATGAGCTGACCA AGTTCAGCCTTTGTGGGCTCATGATGGGAACGCCACTCTTGTGGTCCTCGTCTCCTTTGG CTGTGTCACAGTGACCATCCTGAGGACACCCTCCGCAGCCAGTGACATAAGGTCTTCACC TGTAGCTCCCACGTGATGACCGTGTCCCTGTTTGATGGGACTGTGTTTGTCACATATGCC CAGCCAGGGACTATGGAGTCCATGGAGCAGGGCAAGGTGGTGTCTGTCTTCTACAGCCTG GTCATCCCGATGCTTGGCCCCTTCATCTACAGCCTACGAAACAAGGACATGAAGGAGGCC CTGCGGAGGCTGGGCCAGAGACAAGCACTCATGGGAAGGATGGTGGCC |
| Conceptual translation |
MSTHRNGNLSVVPLWESMLKGLEGGLENQALLFAVFPGLYMVTIPGNLTMTMVIILDTHL HFPVNFFL\ASPFLDLGHASI/PNALVNFSSSSKVVTFAGCAARFFFSLLSTTETFLL AVMAYDCFVAICSLVWCPVTTCLSICIILGPGTYCRVCLSSIVQTGLMFQLPSAGTNHID H/CDMPQLLRLACACLALNELTKFSLCGLMM/NATLVVLVSFGCVTVTILRTPS/SQ XKVFTCSSHVMTVSLFDGTVFVTYAQPGTMESMEQGKVVSVFYSLVIPMLGPFIYSLRN KDMKEALRRLGQRQALMGRMVA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 2 | 241,048,731 | 241,048,731 | Del(1) | -/C | rs71404637 (DbSNP) | |
| 2 | 241,048,735 | 241,048,735 | Del(1) | -/C | rs60296014 (DbSNP) | |
| 2 | 241,049,147 | 241,049,148 | mnp | AA/GG | rs35626598 (DbSNP) | |
| 2 | 241,048,655 | 241,048,655 | SNP | A/G | rs62187060 (DbSNP) | |
| 2 | 241,048,629 | 241,048,629 | SNP | A/G | rs13422126 (DbSNP) | |
| 2 | 241,049,442 | 241,049,442 | SNP | C/A | rs4854028 (DbSNP) | |
| 2 | 241,049,148 | 241,049,148 | SNP | G/A | rs4854029 (DbSNP) | |
| 2 | 241,049,147 | 241,049,147 | SNP | G/A | rs4854030 (DbSNP) | |
| 2 | 240,109,212 | 240,109,212 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 240,109,238 | 240,109,238 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 2 | 240,109,308 | 240,109,308 | SNP | G/A | 1000GP (CEU) | |
| 2 | 240,109,730 | 240,109,730 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 240,109,731 | 240,109,731 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 2 | 240,109,880 | 240,109,880 | SNP | C/G | 1000GP (CEU) | |
| 2 | 240,110,025 | 240,110,025 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 2 | 240,109,387 | 240,109,387 | SNP | G/A | 1000GP (CHBJPT) | |
| 2 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 2 | 240,911,276 | 241,082,695 | CopyNumber | Variation_0031 (DGV) |
| 2 | 241,048,419 | 241,051,466 | CopyNumber | #35 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.