Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR5T1 Olfactory Receptor

Gene Symbol OR5T11 (View this gene in GeneCards)
Family 5
Subfamily T
Pseudogene No
CORP pseudogene probability score 0.03 (functional)
Aliases OR11-179, HsOR11.11.56
External Ids HGNC: 14821   GeneBank: AB065962, BK004336, NM_001004745   
Build #39 labels OR5T1P
Chromosomal location 11:56,275,705-56,276,616 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR5T3 83.23% 310

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR5T1 81% 318
Dog OR5T1B 82% 319
Chimp CONTIG*********** 96% 304
Mouse Or5t17 78% 307
Rat Or5t9 76% 315
Cow OR5T1B 78% 319
Cow OR5T1CP 80% 245

Expression evidences

Source Accession
mRNA BC136993

Sequence information

Nucleotide sequence ATGTTTATATTAATAAGCTTCACAGAAGAATTTGATGTGCAAGTCTTCCTATTTTTATTA
TTTTTAGCAATCTATCTATTCACTCTAATAGGCAATTTAGGGCTGGTTGTACCGATCATT
GGGGATTTCTGGCTTCACAGCCCAATGTACTATTTTCTTGGTGTTTTATCATTCTTGGAT
GTCTGCTATTCTACAGTTGTCACTCCAAAAATGTTGGTCAATTTCCTGGCAAAAAATAAA
TCTATTTCATTTCTTGGATGTGCAACACAGATGTTTCTTGCTTGTACTTTTGGAACCACA
GAATGCTTTCTCTTGGCTGCAATGGCTTATGATCGCTATGTAGCCATCTACAACCCTCTC
CTGTATTCAGTGAGCATGTCACCCAGAGTCTATGTGCCACTCATCACTGCTTCCTATGTT
GCTAGCATTTTACATGCTACTATACATACAGTGGCTACATTTAGCCTGTCCTTCTGTGGA
TCCAATGAAATTAGGCATGTCTTTTGTAATATGCCTCCTCTGCTTGCTATTTCTTGTTCT
GACACTCACGTAATCCAGCTTCTATTCTTCTACTTTGTGGGCTCTATTGAGATAGTCACT
ATCCTGATTGTCCTGATCTCCTATGGTTTTATTCTGTTGGCCATTCTGAAGATGCAGTCT
GCTGAAGGGAGGAGAAAAGTCTTCTCTACATGTGGAGCTCACCTAACTGGAGTGACAATT
TATCATGGGACAATCCTCTTCATGTATGTGAGACCAAGTTCCAGCTACACTTCGGACAAT
GACATGATAGTGTCAATATTTTATACCATTGTGATTCCCATGCTGAATCCCATCATCTAC
AGTTTGCGGAACAAAGATGTAAAGGAGGCAATCAAAAGATTGCTTGTGAGAAATTGGTTC
ATAAATAAGTTA
Conceptual translation MDLYKLQLNNFTEVTMFILISFTEEFDVQVFLFLLFLAIYLFTLIGNLGLVVPIIGDFWL
HSPMYYFLGVLSFLDVCYSTVVTPKMLVNFLAKNKSISFLGCATQMFLACTFGTTECFLL
AAMAYDRYVAIYNPLLYSVSMSPRVYVPLITASYVASILHATIHTVATFSLSFCGSNEIR
HVFCNMPPLLAISCSDTHVIQLLFFYFVGSIEIVTILIVLISYGFILLAILKMQSAEGRR
KVFSTCGAHLTGVTIYHGTILFMYVRPSSSYTSDNDMIVSIFYTIVIPMLNPIIYSLRNK
DVKEAIKRLLVRNWFINKL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 NS C/T P/L 1000GP (YRI, YRI)
11 56,043,293 56,043,293 NS C/T P/L rs7126079 (DbSNP)
11 56,043,604 56,043,604 NS A/G S/G rs12360890 (DbSNP)
11 56,043,702 56,043,702 SYN C/G L/L rs7125697 (DbSNP)
11 56,043,745 56,043,745 NS G/C V/L/F rs72472119 (DbSNP)
11 56,276,128 56,276,128 NS A/G S/G 1000GP (CEU, CHBJPT)
11 56,276,226 56,276,226 SYN G/C L/L 1000GP (CEU)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 52 (Hasin)
11 56,030,078 56,048,002 CopyNumber Variation_75650 (DGV)
11 56,034,758 56,048,002 CopyNumber Variation_85796 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

P60L L94V S164G H205Q % Freq CORP
1 P L S H 60.75 0.312
2 P L G H 38.17 0.312
3 P V G H 0.54 0.312
4 L L S H 0.31 0.078
5 P L S Q 0.15 0.312
6 L L G H 0.08 0.078

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR5T1.aApr07-unspliced main_exon 5UTR chr11 56,275,639 56,275,705 +
CDS chr11 56,275,705 56,276,616 +
3UTR chr11 56,276,616 56,276,619 +