Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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Chromosome:

OR6C71P Olfactory Receptor

Gene Symbol OR6C71P1 (View this gene in GeneCards)
Family 6
Subfamily C
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR12.5.15P
External Ids HGNC: 31300   GeneBank: NG_004347   
Build #39 labels
Chromosomal location 12:55,376,801-55,377,736 (-)
Cluster 12@56
Synteny CLIC#31
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6C74 67.31% 312
OR6C75 67.31% 312
OR6C76 69.18% 305

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6C74 69% 305
Mouse Or6c74 69% 308
Rat Or6c74 68% 312
Cow OR6C76 69% 305
Orang OR6C74 68% 305
Horse OR6C71 82% 305
Chimp OR6C74 69% 305

Sequence information

Nucleotide sequence ATGAGAAACCATACAATGGTGACAACCTTCATTCTTCTAGGACTGACAGGTGATTTACAC
TGGCAAACTGTAATTTTCCTTTTTCTATTTTTAACGTATTTATTGAGTGTCATTGGAAAT
CTAATCATTATCCTGCTCACCTTGCTGGATTCTCACCTCAAAACACCCATGTATTTCTTC
CTTCGGAATTTTTCTGTTTTAGAAATCTTGTTGACATCTGTCTGCATCCCTAGATTCCTA
GTAAGCAAAGTGACTATGGATAAAACTATTTCCTATGATGCTTGTGTGACACAATTATTT
TTTGTCATTTTTTTTGGGTGTATCAGAGTTTTTTCTGCTGGCTGCCATGTCCTATGACCG
TTATGTGGCCATCTGCAAACCCCTGCATTATGCATTCATTATGAGCAACAGAGTCTGCAA
CCAGATGGCTGTTGCCTCTTGGTGGGCTGGTTTGTTAATGATCTTTCCTAGACTTACATG
GGCCTGAGATTGGAATTCTGTGATGCCAATATTATTGACCACTTTTTCTGTGACTATTCT
CCTGTTCTGAAACTCTCCTGCACAGACACACAGGTCATAGAAATGTTAAGCTTTATTTTA
GCCACTGTCACACTCCTGATTACATTGGTCCTGGTAATGTACTCCTACGCAAATATCATA
AAATCTATTCTGAAGGTTTCTTCTGCGCAGCAGAGGAAGAAGGCCTTTTCTACCTGTTCC
TCCCATATGATTGTTGTTTCCATCTCTTACGGCAGCTGTATTTTCATGTATATTAAATCT
TCTGCAGAAGAAGGGGTAGCTTTAAACAAGGGAGTAGCAATACTCAGCACTTCAGTTGCA
CCTGTATTAAATTCTTTTATATATACCTTAAGAAATAAGCAAGTGAAACAAGCCCTGAAG
AATATAGTAAAAAAGTATATCTTTACTACTTTGAAA
Conceptual translation MRNHTMVTTFILLGLTGDLHWQTVIFLFLFLTYLLSVIGNLIIILLTLLDSHLKTPMYFF
LRNFSVLEILLTSVCIPRFLVSKVTMDKTISYDACVTQLF\SFFLGVSEFFLLAAMSYD
RYVAICKPLHYAFIMSNRVCNQMAVASWWAGLLMI/SXYMGLRLEFCDANIIDHFFCD
YSPVLKLSCTDTQVIEMLSFILATVTLLITLVLVMYSYANIIKSILKVSSAQQRKKAFST
CSSHMIVVSISYGSCIFMYIKSSAEEGVALNKGVAILSTSVAPVLNSFIYTLRNKQVKQA
LKNIVKKYIFTTLK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
12 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)
12 55,376,987 55,376,987 SNP G/A 1000GP (CEU, CHBJPT)
12 55,377,125 55,377,125 SNP T/C 1000GP (CEU, CHBJPT)
12 55,377,134 55,377,134 SNP G/T 1000GP (CEU, CHBJPT)
12 55,377,278 55,377,278 SNP A/G 1000GP (CEU, CHBJPT)
12 55,377,341 55,377,341 SNP A/G 1000GP (CEU, CHBJPT)
12 55,377,342 55,377,342 SNP A/T 1000GP (CEU)
12 55,770,771 55,770,771 SNP A/G rs7488140 (DbSNP)
12 55,770,909 55,770,909 SNP C/T rs7485722 (DbSNP)
12 55,770,918 55,770,918 SNP G/T rs7488178 (DbSNP)
12 55,771,061 55,771,061 SNP C/T rs74090688 (DbSNP)
12 55,771,062 55,771,062 SNP A/G rs7488143 (DbSNP)
12 55,771,125 55,771,125 SNP A/G rs7488163 (DbSNP)
12 55,771,125 55,771,126 mnp AA/GT rs71453846 (DbSNP)
12 55,771,126 55,771,126 SNP A/T rs7488164 (DbSNP)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.