Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR6K5P Olfactory Receptor

Gene Symbol OR6K5P1 (View this gene in GeneCards)
Family 6
Subfamily K
Pseudogene Yes
CORP pseudogene probability score
Aliases OR1-20, HsOR1.4.15P, ORL3065
External Ids HGNC: 15032   GeneBank: BK004674, NG_004363   ORDB: ORL3065   
Build #39 labels OR6K5P
Chromosomal location 1:158,742,568-158,743,415 (-)
Cluster 1@159a
Synteny CLIC#4
Remarks Disrupted by Alu repeat

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR6K3 69.37% 284
OR6K4P 73.91% 276
OR6K6 65.36% 280

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR6K5 84% 284
Mouse Or6k14 78% 281
Rat Or6k14b 78% 284
Cow OR6K5 85% 284
Orang OR6K16P 76% 284
Horse OR6K5 87% 284
Chimp OR6K4 74% 281

Sequence information

Nucleotide sequence ATGGATCCAGAGAATCAGACAATGGTGACTGAGTTTTATTTCTCTGATTTTCCTCAATCT
AAGAATGGCAGCCTCTTATTCTTCATTCCTATGCTCTTTATTTATATATTCATTCTTGTT
GGAAATTTCATGATTTTCTTTGCTGTCCAACCGGACCCCCATCTCCATAATCCTATGTAC
AGTTTTATCAGTGTCTTCTCCTTCCTGGAGATTTGGTACACCACCGTGACTATCCCCAAG
ATGCTCTCCAACCTTCTCAGTGAACAGAAAACCATCTCTTTCATAGGTTGCCTCCTGCAG
ATGTACTTCTTCCACTCACTCGGGGTCACAGAAGCCCTAGTCCTCACAGTGATGGCCATT
GACAGGTGTGTAGCCATCTGCAACCCCCTTCGCTATGCAATCACTATGTCCCCTTGACTG
TGCATCCAGCTCTCCACTGGCTCTTGCATTTTTGGCTTCCTCATGTTACTGCCAGAGATT
GTGTGCATTTCCACTCTTCCATTCTGTGGCGCCAACCAAATTCATCAACTCTTTTGTGAC
TTTGAACCTGTGCTGCAGTTGGCCTGCACAGATACGTAAATAATTCTGGTTGAAGATGTG
ATCCGTGCTATTTCCATTCTGACCTCTGTCTCTGTCATCACCCTTTTCTATTTAAGAATC
ATCACGGTGATCCTGAGGATTCCCTCTGGTGAGAGCCGTCAGAAGGCTTTCTCCACATGT
GCAGCCCACATTGCTATTTTCTTGCTGTTTTTTGGCAGTGTGTCACTCATGTATCTGCGC
TTCTCTGTCACATTCCCACCATTACTGGACAAGGCCATTGCACTGATGTTTGCTGTCCTT
GCCCTACT
Conceptual translation MDPENQTMVTEFYFSDFPQSKNGSLLFFIPMLFIYIFILVGNFMIFFAVQPDPHLHNPMY
SFISVFSFLEIWYTTVTIPKMLSNLLSEQKTISFIGCLLQMYFFHSLGVTEALVLTVMAI
DRCVAICNPLRYAITMSPXCIQLSTGSCIFGFLMLLPEIVCISTLPFCGANQIHQLFCD
FEPVLQLACTDTXILVEDVIRAISILTSVSVITLFYLRIITVILRIPSGESRQKAFSTC
AAHIAIFLLFFGSVSLMYLRFSVTFPPLLDKAIALMFAVLALLFLFFFFFFFLRRSLALS
PRLECSGGIS

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
1 100 -100 SNP G/A 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)
1 158,712,048 158,712,369 Del(321) Del rs72184812 (DbSNP)
1 158,712,493 158,712,493 SNP A/G rs2518516 (DbSNP)
1 158,712,510 158,712,510 SNP G/A rs2820132 (DbSNP)
1 158,712,627 158,712,627 SNP G/T rs2564856 (DbSNP)
1 158,712,645 158,712,645 SNP C/T rs2852645 (DbSNP)
1 158,712,727 158,712,727 SNP A/T rs12076003 (DbSNP)
1 158,713,057 158,713,057 SNP C/T rs383863 (DbSNP)
1 158,742,703 158,742,703 SNP G/A 1000GP (CEU, CHBJPT)
1 158,742,837 158,742,837 SNP T/G 1000GP (CEU, CHBJPT)
1 158,742,855 158,742,855 SNP C/T 1000GP (CEU, CHBJPT)
1 158,742,897 158,742,897 SNP T/G 1000GP (CEU)
1 158,743,267 158,743,267 SNP T/C 1000GP (CEU, CHBJPT)

Variations - CNVs

Chr Start End Type Sources
1 158,711,525 158,712,980 CopyNumber Variation_97522 (DGV)
1 158,711,800 158,712,613 InDel Variation_60894 (DGV)
1 158,711,946 158,712,477 InDel Variation_42725 (DGV)
1 158,712,047 158,712,369 InDel Variation_39662 (DGV)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.