Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR7E28P Olfactory Receptor

Gene Symbol OR7E28P1 (View this gene in GeneCards)
Family 7
Subfamily E
Pseudogene Yes
CORP pseudogene probability score
Aliases hg616, OST128, HsOR2.3.2P, ORL4103
External Ids HGNC: 8400   GeneBank: AF399378, NG_004131   ORDB: ORL4103   
Build #39 labels OR7E133P, OR7E28P, OR7E107P, OR7E27P
Chromosomal location 2:158,862,345-158,863,291 (+)
Cluster 2@160
Synteny CLIC#0
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR7E26P 91.93% 322
OR7E31P 88.57% 315
OR7E36P 89.31% 318

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR7E24 70% 315
Mouse Or7e177 65% 312
Rat Or7e173 65% 307
Cow OR7E193 70% 301
Orang OR7E15P 86% 315
Orang OR7E14P 84% 315
Orang OR7E31DP 87% 297
Horse OR7E225 69% 308
Chimp OR7E26P 93% 322

Expression evidences

Source Accession
ESTs EC516607

Sequence information

Nucleotide sequence AGTTGTCCAATCTCTACAGACCCACAGAATCTAACAGATGTCTCTATATTCCTCCTCCTA
GAAGCTCAGAGGATCCAGAACGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGA
ACCTGCTCATCATCCTGGCCGTCACCCCTGACTCCCACCTCCACATCCCCATGTACTTCT
TCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGA
TTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGT
CTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTAT
GACCGGTTTGTAGCCATCTGTCACCCTCTATGTCATTCAGCCATCACGAACCCGTGTTTC
TGTGGCTTTCTAGTTTTGTTGTCTTTTTTTTTTCTCAGTCTTTTAGACGCCCAGCTGCAC
AACTTGATTGCCTTACAAAGGACCTGCTTCAAGGATGTGGAAATTCCTAATTTCTTCTGT
GACCCTTCTCAATTCCCCGTCTTGCATGTTGTGGCACCTTCACCAATAACATAATCATGT
ATTTCCCTGCTGCCATATTTGGTTTTCTTCCCATCTCGGGGACCCTTTTCTCTTACGATA
AAATTGTTTTCTCCATTCTGAGGGTTTCATCATCAGGTGGGAAGCATAAGGCCTTCTCCA
CCAGGGGGTCTCACCTGTCAGTTGTTTGCTGATTTTATGGAACAGGCATTGGAGGCTACC
TCAGTTCAGATGTGTCATCTTCCCCGAGAAAGGCTGCAGTGGCCTCAGTGATGTACACGG
TGGCCATCCCCATGCTGAACCCCTTCATCTACAGCCTGAGAAACAGGGATATTAAAAGTG
TCCTGCGGCAGCCGCACGGCAGCACGGTCTCATCTCAATATCTTCTT
Conceptual translation SCPISTDPQNLTDVSIFLLLE/SEDPERLFLSMCLVTVLGNLLIILAVTPDSHLHIPMY
FFLSNLSLPDIGFTSTTVPKMIVDIQSHSRVISYAGCLTQMSLFAIFGGMEE\MLLSVM
AYDRFVAICHPLCHSAITNPCFCGFLVLLSFFFLSLLDAQLHNLIALQRTCFKDVEIPNF
FCDPSQF/RLACCGTFTNNIIMYFPAAIFGFLPISGTLFSYDKIVFSILRVSSSGGKHK
AFSTRGSHLSVVCXYGTGIGGYLSSDVSSSPRKAAVASVMYTVAIPMLNPFIYSLRNRD
IKSVLRQPHGSTVSSQYLL

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
2 159,719,322 159,719,322 SNP A/G rs9751996 (DbSNP)
2 159,719,270 159,719,270 SNP A/G rs72491238 (DbSNP)
2 159,719,031 159,719,031 SNP A/G rs34995873 (DbSNP)
2 159,718,996 159,718,996 SNP C/T rs10169584 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
2 159,710,696 159,730,096 CopyNumber Variation_38893 (DGV)
2 159,651,734 159,953,466 CopyNumber Variation_53156 (DGV)
2 159,706,274 159,747,664 CopyNumber Variation_68193 (DGV)
CopyNumber 131 (Hasin)
2 159,718,757 159,721,803 Deletion, CopyNumber #257 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

AceView Gene Models

The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.

Accession Type Chr Start End Strand
OR7E89PandOR7E28P.aApr07 exon_5UTR chr2 158,804,298 158,804,369 +
main_exon CDS_partial chr2 158,862,409 158,862,954 +