OR7E47P Olfactory Receptor
| Gene Symbol | OR7E47P1 (View this gene in GeneCards) |
| Family | 7 |
| Subfamily | E |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HSORBPL41, bpl41-16, HsOR12.4.1P, ORL4090 |
| External Ids | HGNC: 8421 GeneBank: AF399395, BC042060, HSORBPL41, NG_004128 ORDB: ORL4090 |
| Build #39 labels | OR7E47P |
| Chromosomal location | 12:52,107,318-52,108,263 (+) |
| Cluster | 12@53 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR7E109P | 88.92% | 316 |
| OR7E31P | 88.89% | 315 |
| OR7E37P | 89.27% | 317 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR7E24 | 70% | 315 |
| Mouse | Or7e178 | 65% | 310 |
| Rat | Or7e173 | 62% | 306 |
| Cow | OR7E186 | 67% | 307 |
| Orang | OR7E15P | 88% | 315 |
| Orang | OR7E14P | 86% | 315 |
| Horse | OR7E225 | 68% | 308 |
| Chimp | OR7E36P | 88% | 318 |
| Chimp | OR7E14P | 87% | 315 |
| Chimp | OR7E33P | 85% | 316 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | EC507496 |
| mRNA | X87825 |
| GNF Atlas2 | 222304_x_at |
| GNF Atlas2 | gnf1h10479_x_at |
Sequence information
| Nucleotide sequence |
AGTTGTCCAAACTATACAGACCCACAGAATCTAACAGATGTCTCTATATTCCTCCTCCTA GAACCTCAGAGGATCCAGAACGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCC TGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCA CACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCAC CACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGG CTGCCTGACTCAGAAGTCTCTCTTTGCCATTTTTGGAGGCACGGAAGAGAGACATGCTCC TGAGTGTGATGGCCTATGACCGGTTTGTAGCCATCTGTCACCCTCTATATCATTCAGCCA TCATGAACCTGTGTTTCTGTGGCTTCCTAGTTTTGCTGTCTTTTTTTTTTCTCAGTCTTT TAGACTCCCAGCTGTACAACTTGATTGCCTTACTAATGACCTGCTTCAAGGAGGTGGACA TTCCTAATTTCTTCTGTGACCTTTCTCAACTCCCCCATCTTGCCGTTGTGACACCTTCAT CAATAACATAATCATGTATTTCCCTACTGCCATATTTGGTTTTCTTCCCATCTCGGGGAC CCTTTTCTCTTACTATAAAATTGTTTCCTCCATTCTGAGGGTTTCATCATCAGGTGGGAA GTATAAAGCCTTCTCCACCTGTGGGTCTCACCTGTCAGTTGTTTGCTGATTTTATGGAAG AGGTGTTGGAGGGTACCTCAGTTCAGATGTGTCATCTTCCCCCAGAAAGGGTGCAGTGGC TGCAGTGATGTACACGGTGGTCACCTCCATGCTCAACCCCTTTATCTACAGCCTGGGAAA CAGGGATATTAAAAGTGTCTTGCGGCGGCCGCACGGCAGCACTGTC |
| Conceptual translation |
SCPNYTDPQNLTDVSIFLLLE/SEDPERQLVLAGLFLSMCLVMVLGNLLII/AMSPDS HLHTSMYFFLSNLSLPDIGFTSTTVPQMTVDIQSRSRVISYAGCLTQKSLFAIFGGTEE\br/>DMLLSVMAYDRFVAICHPLYHSAIMNLCFCGFLVLLSFFFLSLLDSQLYNLIALLMTCFK EVDIPNFFCDLSQLPHL/RCDTFINNIIMYFPTAIFGFLPISGTLFSYYKIVSSILRVS SSGGKYKAFSTCGSHLSVVCXYGRGVGGYLSSDVSSSPRKGAVAAVMYTVVTSMLNPFI YSLGNRDIKSVLRRPHGSTV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 12 | 52,108,101 | 52,108,101 | SNP | T/C | 1000GP (CEU) | |
| 12 | 52,501,885 | 52,501,885 | SNP | C/T | rs28687915 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 12 | 52,500,917 | 52,501,141 | InDel | Variation_86379 (DGV) |
| 12 | 52,500,917 | 52,501,603 | InDel | Variation_76037 (DGV), Variation_86377 (DGV) |
| 12 | 52,501,002 | 52,504,047 | Deletion | #235 (Waszak) |
| 12 | 52,501,099 | 52,501,365 | InDel | Variation_76038 (DGV) |
| 12 | 52,501,253 | 52,501,393 | InDel | Variation_86378 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR7E47P.aApr07 | exon_5UTR | chr12 | 52,079,696 | 52,080,181 | + | |
| main_exon | CDS_partial | chr12 | 52,107,379 | 52,108,263 | + | |
| 3UTR | chr12 | 52,108,263 | 52,108,272 | + | ||
| OR7E47P.bApr07 | exon_5UTR | chr12 | 52,093,564 | 52,093,629 | + | |
| main_exon | CDS_partial | chr12 | 52,107,379 | 52,108,250 | + | |