Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR8J2P Olfactory Receptor

Gene Symbol OR8J2P1 (View this gene in GeneCards)
Family 8
Subfamily J
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-175, HsOR11.11.53P, ORL3521
External Ids HGNC: 15311   GeneBank: AB065839, AF399356, AF546686-AF546699, AY284229-AY284260, BK004692, NG_004185   ORDB: ORL3521   
Build #39 labels OR8J2P
Chromosomal location 11:56,210,856-56,211,820 (-)
Cluster 11@56
Synteny CLIC#26
Remarks Segregating Pseudo Gene, a nonsynonymous SNP T->C at position 190 (AA change=*/R )

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR8J1 77.24% 312
OR8J3 78.14% 311

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR8J2 85% 311
Dog OR8J2C 84% 311
Dog OR8J2B 84% 311
Mouse Or8j3b 81% 310
Rat Or8j3d 80% 310
Cow OR8J2 85% 311
Orang OR5E1P 55% 308
Horse OR8J3G 77% 311
Chimp OR8J2 98% 311

Sequence information

Nucleotide sequence ATGGCTTCAGGAAATCTCACATGGGTGACGGAGTTCATTCTTGTGGGAGTCTCAGATGAT
CCGGAGCTCCAGATTCCCCTCTTCCTGGTCTTCCTGGTGCTCTATTTGCTGACCGTGGCA
GGGAACCTGGGCATCATCACCCTCACCAGTGTTGACCCTCAACTTCAAACCCCCATGTAC
TTTTTCCTCTGACACTTGGCTATTATTAATCTTTGCAATTCTACTGTCGTTGCCCCTAAA
ATGCTGGTTAACTTCCTGGTTACCAAGAAAACCATATCATACTATGGATGTGCAGCCCAA
CTGGGTGGATTCTTGGTTTTCATTGTGGCTGAGATTTTCACGCTGGCTGCAATGGCCTAT
GACCGCTATGTGGCTATTTGGAGCCCTCTGCTCTACGCCGTAGTGGTGTCTCCAAAGGTG
TGTCGTCTGCTGGTGTCCCTCACATACCTTCAGAGTCTTATCACAGCACTGACTGTCTCT
TCCTGTGTGTTCTCTGTGTCATACTGTTCTTCCAACATTATCAACCATTTTTACTGTGAT
GATGTCCCTTTGCTAGCATTGTCCTGTTCTGATACCTACATTCCAGAAACAGCAGTCTTT
ATCTTTTCAGGGACCAACTTGCTTTTCTCCATGATCGTTGTTCTGATATCCTACTTCAAC
ATTGTTATTACCATTTTGAGGATACGTTCCTCAGAAGGACGACAAAAAGCCTTTTCCACC
TGTGCTTCTCACATGATAGCTGTGGTTGTGTTCTATGGGACTCTCCTTTTCATGTATTTG
CAACCAAGGAGTAATCATTCATTAGATACTGACAAAATGGCTTCGGTCTTCTACACCCTG
GTGATACCAGTGCTGAACCCTCTAATCTACAGCCTCAGGAACAAGAACGTGAAGGATGCA
CTAAAGAGGTTCCTAGATAACCCATGCCGATCACTCAAACTAATGTAAATGTAAAGCTAA
AACTA
Conceptual translation MASGNLTWVTEFILVGVSDDPELQIPLFLVFLVLYLLTVAGNLGIITLTSVDPQLQTPMY
FFLXLAIINLCNSTVVAPKMLVNFLVTKKTISYYGCAAQLGGFLVFIVAEIFTLAAMAY
DRYVAIWSPLLYAVVVSPKVCRLLVSLTYLQSLITALTVSSCVFSVSYCSSNIINHFYCD
DVPLLALSCSDTYIPETAVFIFSGTNLLFSMIVVLISYFNIVITILRIRSSEGRQKAFST
CASHMIAVVVFYGTLLFMYLQPRSNHSLDTDKMASVFYTLVIPVLNPLIYSLRNKNVKDA
LKRFLDNPCRS

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 SNP A/G 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)
11 55,978,361 55,978,361 SNP C/G rs71493590 (DbSNP)
11 55,978,388 55,978,388 SNP C/A rs61747890 (DbSNP)
11 55,978,403 55,978,403 SNP T/C rs61740260 (DbSNP)
11 55,978,635 55,978,635 SNP G/A rs61729742 (DbSNP)
11 55,978,721 55,978,721 SNP G/A rs61734115 (DbSNP)
11 55,978,872 55,978,872 SNP T/C rs61729560 (DbSNP)
11 55,978,956 55,978,956 SNP A/G rs1481927 (DbSNP)
11 55,979,047 55,979,047 SNP T/G rs61730950 (DbSNP)
11 55,979,107 55,979,107 SNP A/G rs55684887 (DbSNP)
11 55,979,266 55,979,266 SNP C/T rs7130251 (DbSNP)
11 56,210,913 56,210,913 SNP C/T 1000GP (CHBJPT)
11 56,211,480 56,211,480 SNP G/A 1000GP (CEU, CHBJPT)
11 56,211,631 56,211,631 SNP A/G 1000GP (CEU)
11 56,211,790 56,211,790 SNP C/T 1000GP (CEU, CHBJPT)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.