OR8Q1P Olfactory Receptor
Gene Symbol | OR8Q1P1 (View this gene in GeneCards) |
Family | 8 |
Subfamily | Q |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | HsOR11.18.43P, ORL3643 |
External Ids | HGNC: 15317 GeneBank: NG_004182 ORDB: ORL3643 |
Build #39 labels | OR8Q1P |
Chromosomal location | 11:124,601,602-124,602,258 (+) |
Cluster | 11@124 |
Synteny | CLIC#29 |
Remarks | Disrupted by LTR repeat |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR8A1 | 45.27% | 243 |
OR8A2P | 42.19% | 237 |
OR8G5 | 38.11% | 244 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR8A1 | 45% | 243 |
Mouse | Or8a1b | 41% | 243 |
Rat | Or8a1b | 41% | 243 |
Cow | OR8A1F | 44% | 243 |
Orang | OR8Q2P | 65% | 224 |
Horse | OR8A1I | 44% | 243 |
Chimp | OR8A1 | 43% | 243 |
Sequence information
Nucleotide sequence |
ATGGCAGCAGAAAGTCACTCTACGGTGACAGAGTTCATTCTCAGGAAAAAGCCAGCAAGG GCTCCAGCTCCCCCTCTTCTAGGGATCTGTTTGAAAACCGTAGTGGGGGCCCTCATCTTG ATCACTCTAGTTTTCCTTAATTCTCAGCTTCACCCTCCCATGTACTACGTCATCAGAAAT TTATCATTTATGGATCACTGCAATTGCTCTATTAGTACCCCTAAAATACTGGTGAAGTTT GTGTTAGAGAAGACCATCATCTCCTATGAGGACGGCATGTCACAGCTTTGTAGTGCTTCG TGTTTATATTGTCATGGCCAAGCGTAACATGCGGACCAGCAACTGCTGTCATCACATTTC ATCAAGTCAGCTCCCTGCTGGTAGTTGTAGTATTTATATGGAGTTGACTGGTACAACAAT AGATATTTTGCCTTGTATTAAAATAGTACTAGTGTGAGTTATTCATCAGTCATACTTCTC TCATGCACTAGCATCTATGATATTGATAGGACAATTTTCTTTTTTACTTGATGCAATATT GTAGTCACTAGATTAACAGTTGTTTCCTACTCCTTTTCTCTCCAGCATCCTCCACATCAG CTTTACAAAGGGCAAGCTCTGGGTTTTTCCCGTAGGTCTGACGCATTCATGCTGTTG |
Conceptual translation |
MAAESHSTVTEFILRKK\QGLQLPLFX/CLKTVVGALILITLVFLNSQLHPPMYYVI RNLSFMDHCNCSISTPKILVKFVLEKTIISYEDGMSQLCSA/VFILSWPSVTCGPATAV ITFHQVSSLLVVVVFIWSXVQQXFCLVLKXXEL\SVILLSCTSIYDIDRTIFFFT XNIVVTRLTVVSY/L/LSSILHISFTKGKLWVFPVGLTHSC Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 124,471,840 | 124,471,839 | Ins(1) | -/C | rs34070831 (DbSNP) | |
11 | 124,472,139 | 124,472,139 | SNP | A/C | rs11820079 (DbSNP) | |
11 | 124,472,006 | 124,472,006 | SNP | A/G | rs11820076 (DbSNP) | |
11 | 124,471,997 | 124,471,997 | SNP | A/G | rs11219730 (DbSNP) | |
11 | 124,471,503 | 124,471,503 | SNP | A/T | rs73622435 (DbSNP) | |
11 | 124,602,243 | 124,602,243 | SNP | C/T | 1000GP (CHBJPT) | |
11 | 100 | -100 | SNP | A/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
CopyNumber | 13 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.