OR9G4 Olfactory Receptor
| Gene Symbol | OR9G41 (View this gene in GeneCards) |
| Family | 9 |
| Subfamily | G |
| Pseudogene | No |
| CORP pseudogene probability score | 0.01 (functional) |
| Aliases | OR11-216, HsOR11.11.89, ORL3277 |
| External Ids | HGNC: 15322 GeneBank: AB065738, AF399530, BK004400, NM_001005284 ORDB: ORL3277 |
| Build #39 labels | OR9G4 |
| Chromosomal location | 11:56,742,831-56,743,766 (-) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR9G3P | 60.98% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR9G3 | 64% | 303 |
| Mouse | Or9g4 | 87% | 312 |
| Rat | Or9g4 | 87% | 312 |
| Cow | OR9G4EP | 84% | 311 |
| Cow | OR9G4D | 82% | 311 |
| Cow | OR9G4CP | 81% | 311 |
| Orang | OR5AU1 | 53% | 300 |
| Horse | OR9G4FP | 82% | 311 |
| Chimp | OR9G3P | 62% | 303 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h10902_at |
Sequence information
| Nucleotide sequence |
ATGGAAGTGGGAAATTGCACCATCCTGACTGAATTCATCTTGTTGGGTTTCTCAGCAGAT TCCCAGTGGCAGCCGATTCTATTTGGAGTGTTTCTGATGCTCTATTTGATAACCTTGTCA GGAAACATGACCTTGGTTATCTTAATCCGAACTGATTCCCACTTGCATACACCTATGTAC TTTTTCATTGGCAATCTGTCTTTTTTGGATTTCTGGTATACCTCTGTGTATACCCCCAAA ATCCTGGCCAGTTGTGTCTCAGAAGATAAGCGCATTTCCTTGGCTGGATGTGGGGCTCAG CTGTTTTTTTCCTGTGTTGTAGCCTACACTGAATGCTATCTCCTGGCAGCCATGGCATAT GACCGCCATGCAGCAATTTGTAACCCATTGCTTTATTCAGGTACCATGTCCACCGCCCTC TGTACTGGGCTTGTTGCTGGCTCCTACATAGGAGGATTTTTGAATGCCATAGCCCATACT GCCAATACATTCCGCCTGCATTTTTGTGGTAAAAATATCATTGACCACTTTTTCTGTGAT GCACCACCATTGGTAAAAATGTCCTGTACAAACACCAGGGTCTACGAAAAAGTCCTGCTT GGTGTGGTGGGCTTCACAGTACTCTCCAGCATTCTTGCTATCCTGATTTCCTATGTCAAC ATCCTCCTGGCTATCCTGAGAATCCACTCAGCTTCAGGAAGACACAAGGCATTCTCCACC TGTGCTTCCCACCTCATCTCAGTCATGCTCTTCTATGGATCATTGTTGTTTATGTATTCA AGGCCTAGTTCCACCTACTCCCTAGAGAGGGACAAAGTAGCTGCTCTGTTCTACACCGTG ATCAACCCACTGCTCAACCCTCTCATCTATAGCCTGAGAAACAAAGATATCAAAGAGGCC TTCAGGAAAGCAACACAGACTATACAACCACAAACA |
| Conceptual translation |
MEVGNCTILTEFILLGFSADSQWQPILFGVFLMLYLITLSGNMTLVILIRTDSHLHTPMY FFIGNLSFLDFWYTSVYTPKILASCVSEDKRISLAGCGAQLFFSCVVAYTECYLLAAMAY DRHAAICNPLLYSGTMSTALCTGLVAGSYIGGFLNAIAHTANTFRLHFCGKNIIDHFFCD APPLVKMSCTNTRVYEKVLLGVVGFTVLSSILAILISYVNILLAILRIHSASGRHKAFST CASHLISVMLFYGSLLFMYSRPSSTYSLERDKVAALFYTVINPLLNPLIYSLRNKDIKEA FRKATQTIQPQT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 56,510,710 | 56,510,710 | Del(1) | -/A | rs34718198 (DbSNP) | |
| 11 | 56,510,623 | 56,510,623 | NS | A/G | V/A | rs513873 (DbSNP) |
| 11 | 56,511,160 | 56,511,160 | NS | A/G | F/S | rs11228763 (DbSNP) |
| 11 | 56,510,672 | 56,510,672 | NS | C/T | D/N | rs577576 (DbSNP) |
| 11 | 56,511,025 | 56,511,025 | NS | T/C | Y/C | rs61736061 (DbSNP) |
| 11 | 56,510,694 | 56,510,694 | SYN | C/T | P/P | rs1397053 (DbSNP) |
| 11 | 56,743,147 | 56,743,147 | NS | A/G | V/A | 1000GP (CEU, CHBJPT) |
| 11 | 56,743,196 | 56,743,196 | NS | T/C | N/D | 1000GP (CEU, CHBJPT) |
| 11 | 56,743,218 | 56,743,218 | SYN | T/C | P/P | 1000GP (CEU, CHBJPT) |
| 11 | 56,743,684 | 56,743,684 | NS | A/G | F/S | 1000GP (CEU, CHBJPT) |
| 11 | 100 | -100 | NS | A/G | V/A | 1000GP (YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | T/C | P/P | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| V222A | N206D | F43S | % Freq | CORP | |
|---|---|---|---|---|---|
| 1 | V | D | F | 66.90 | 0.052 |
| 2 | A | D | F | 21.89 | 0.052 |
| 3 | V | D | S | 9.75 | 0.052 |
| 4 | V | N | F | 1.46 | 0.052 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR9G4.aApr07-unspliced | main_exon | 3UTR | chr11 | 56,742,828 | 56,742,831 | - |
| CDS | chr11 | 56,742,831 | 56,743,766 | - | ||
| 5UTR | chr11 | 56,743,766 | 56,743,811 | - | ||